MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:31.2 nTPM
GTEx:19.2 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:151.4 nTPM
Allen mouse:14.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
1827 Male, age 72, unknown 32.9
2411 Female, age 72, unknown 28.6
2219 Male, age 76, both hemispheres 25.7
2019 Male, age 18, unknown 25.5
1870 Female, age 42, unknown 24.9
2586 Male, age 75, left hemisphere 24.4
1833 Male, age 53, unknown 23.0
2828 Female, age 72, unknown 22.1
1830 Male, age 51, unknown 21.4
2666 Male, age 74, left hemisphere 18.4
Dorsal raphe nucleus
nTPM: 27.5
2298 Female, age 72, unknown 33.0
2750 Male, age 76, both hemispheres 28.6
2047 Male, age 72, unknown 28.5
1828 Male, age 53, unknown 26.3
2016 Female, age 72, unknown 21.1
Inferior colliculus
nTPM: 25.7
2097 Female, age 72, unknown 31.4
1848 Female, age 42, unknown 25.6
1890 Male, age 53, unknown 24.1
2849 Male, age 72, unknown 21.9
Median raphe nucleus
nTPM: 30.1
2220 Male, age 76, midline 30.1
Periaquaductal grey, anterior
nTPM: 31.2
1947 Male, age 18, unknown 34.9
2502 Female, age 75, unknown 29.5
1795 Male, age 51, unknown 29.1
Periaquaductal grey, dorsal
nTPM: 23.1
1840 Male, age 53, unknown 26.3
2850 Male, age 76, both hemispheres 23.7
1831 Male, age 72, unknown 21.2
2464 Female, age 72, unknown 21.1
Periaquaductal grey, lateral
nTPM: 22.9
2272 Male, age 74, both hemispheres 23.3
2053 Male, age 18, unknown 22.8
2140 Male, age 76, both hemispheres 22.8
Pretectal area
nTPM: 29.2
1816 Male, age 51, unknown 37.3
2007 Male, age 72, unknown 37.0
1817 Female, age 42, unknown 33.9
1944 Female, age 72, unknown 32.2
1815 Male, age 53, unknown 31.7
2667 Female, age 75, unknown 27.4
2273 Male, age 74, both hemispheres 27.3
2224 Female, age 72, unknown 25.0
2407 Male, age 75, both hemispheres 24.2
2825 Male, age 18, unknown 23.8
2316 Male, age 76, right hemisphere 21.8
Red nucleus
nTPM: 24.9
2725 Female, age 75, unknown 33.1
1821 Female, age 72, unknown 31.7
2584 Male, age 75, left hemisphere 31.7
2588 Male, age 74, left hemisphere 26.4
2785 Male, age 18, unknown 25.3
1865 Male, age 51, unknown 23.9
2503 Female, age 72, unknown 23.8
2769 Male, age 72, unknown 21.0
2227 Male, age 72, unknown 20.8
1954 Female, age 42, unknown 20.5
2823 Male, age 76, right hemisphere 20.5
1904 Male, age 53, unknown 20.1
Substantia nigra
nTPM: 30.5
2241 Male, age 72, unknown 39.1
1916 Female, age 42, unknown 37.8
2409 Female, age 72, unknown 33.6
1851 Male, age 51, unknown 33.1
1941 Male, age 53, unknown 31.6
1889 Female, age 72, unknown 30.9
2583 Male, age 75, right hemisphere 25.9
2699 Male, age 18, unknown 25.4
2590 Female, age 75, unknown 24.6
2665 Male, age 74, both hemispheres 23.4
Superior colliculus
nTPM: 25.2
1796 Male, age 53, unknown 31.0
2261 Male, age 18, unknown 29.6
2087 Female, age 72, unknown 28.8
1895 Male, age 76, right hemisphere 26.5
2587 Male, age 74, left hemisphere 25.4
2668 Female, age 75, unknown 24.9
2664 Male, age 75, both hemispheres 23.9
1839 Male, age 51, unknown 22.9
1913 Female, age 42, unknown 20.6
1995 Male, age 72, unknown 18.1
Ventral tegmental area
nTPM: 27.1
2218 Male, age 76, both hemispheres 31.3
1915 Female, age 42, unknown 30.5
2410 Female, age 72, unknown 27.7
1942 Male, age 51, unknown 25.6
2223 Female, age 72, unknown 24.4
2021 Male, age 53, unknown 23.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 183

Max nTPM: 45.8
Min nTPM: 3.4
Std nTPM: 7.7
Median nTPM: 17.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 43.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 43.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 43.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 36.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 35.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 34.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 33.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 33.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 33.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 51.8
Min nTPM: 26.9
Sample A Female 51.8
Sample B Female 32.8
Sample C Male 47.9
Sample D Male 26.9
Midbrain
nTPM: 49.9
Samples: 4

Max nTPM: 73.3
Min nTPM: 31.2
Sample A Female 31.2
Sample B Female 39.9
Sample C Male 73.3
Sample D Male 55.2
Periaqueductal gray
nTPM: 37.5
Samples: 3

Max nTPM: 42.6
Min nTPM: 34.8
Sample B Female 34.8
Sample C Male 42.6
Sample D Male 35.1
Superior colliculi
nTPM: 49.8
Samples: 4

Max nTPM: 66.3
Min nTPM: 34.6
Sample A Female 51.0
Sample B Female 34.6
Sample C Male 66.3
Sample D Male 47.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 151.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.4
Samples: 4

Max nTPM: 163.8
Min nTPM: 136.5
Sample A Male 136.5
Sample B Male 156.8
Sample C Female 163.8
Sample D Female 148.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.1
77465026 Antisense, RP_070129_03_A02, Mouse strain C57BL/6J (56 days, male) 14.1

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