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LZTS3
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • LZTS3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:79.5 nTPM
FANTOM5:107.2 Scaled Tags Per Million
Pig:127.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA031008Antibody HPA031009
Glial cells Not detectedLow
Neuronal cells MediumNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 79.5
Samples: 300

Max nTPM: 163.4
Min nTPM: 7.4
Std nTPM: 36.6
Median nTPM: 79.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 163.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 160.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 152.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 151.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 149.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 149.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 149.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 148.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 147.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 146.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 144.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 143.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 143.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 143.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 139.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 139.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 138.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 137.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 136.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 135.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 134.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 133.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 132.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 131.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 131.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 130.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 129.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 129.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 129.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 128.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 127.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 127.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 126.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 126.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 126.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 125.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 125.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 125.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 125.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 124.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 124.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 122.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 121.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 120.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 119.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 119.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 119.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 119.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 119.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 118.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 117.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 117.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 117.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 117.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 116.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 116.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 116.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 116.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 114.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 114.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 114.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 113.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 113.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 112.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 112.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 112.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 111.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 110.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 110.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 109.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 109.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 109.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 108.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 108.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 108.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 108.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 107.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 107.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 107.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 106.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 106.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 106.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 105.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 104.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 104.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 104.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 104.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 103.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 102.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 102.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 102.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 101.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 101.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 101.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 100.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 100.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 100.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 100.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 99.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 99.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 99.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 99.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 99.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 98.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 98.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 98.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 98.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 97.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 96.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 96.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 96.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 95.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 95.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 95.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 94.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 94.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 94.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 94.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 93.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 92.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 91.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 91.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 90.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 90.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 89.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 89.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 89.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 89.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 89.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 88.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 87.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 86.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 85.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 85.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 85.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 84.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 83.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 83.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 82.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 82.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 81.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 81.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 81.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 80.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 80.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 79.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 79.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 79.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 79.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 79.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 79.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 79.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 78.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 78.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 77.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 77.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 77.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 76.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 76.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 75.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 75.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 75.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 73.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 72.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 71.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 71.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 71.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 70.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 70.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 70.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 70.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 70.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 69.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 69.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 68.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 68.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 67.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 67.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 67.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 66.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 66.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 66.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 65.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 65.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 64.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 64.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 64.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 64.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 63.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 63.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 63.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 63.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 62.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 62.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 61.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 59.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 58.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 58.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 58.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 58.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 57.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 55.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 55.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 55.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 54.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 54.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 54.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 52.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 52.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 52.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 52.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 51.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 49.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 48.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 48.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 47.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 47.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 47.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 47.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 47.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 46.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 45.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 45.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 45.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 45.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 45.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 44.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 44.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 44.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 44.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 44.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 43.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 42.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 42.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 42.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 42.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 42.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 42.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 41.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 41.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 41.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 41.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 40.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 40.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 39.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 38.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 38.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 38.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 37.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 37.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 35.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 35.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 35.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 34.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 34.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 33.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 32.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 32.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 32.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 32.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 32.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 31.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 30.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 30.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 29.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 29.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 29.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 29.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 29.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 28.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 28.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 27.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 27.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 26.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 26.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 25.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 25.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 24.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 24.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 24.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 23.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 23.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 23.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 22.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 21.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 19.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 19.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 19.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 17.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 16.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 15.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 12.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 7.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 107.2
FF:10164-103B2 76 years, female 107.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.1
Pig sample Sample description nTPM
Caudate
nTPM: 127.1
Samples: 4

Max nTPM: 163.4
Min nTPM: 91.4
Sample A Female 91.4
Sample B Female 129.4
Sample C Male 163.4
Sample D Male 124.3

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