HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:18.5 nTPM
HPA Brain:35.1 nTPM
GTEx:18.5 nTPM
FANTOM5:44.2 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:79.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051187Antibody HPA076450Antibody CAB020679
Glial cells Not detectedLowMedium
Neuronal cells LowNot detectedHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 35.1
Sample id Sample description nTPM
Hippocampus
nTPM: 34.0
2529 Female, age 94, left hemisphere 36.7
2148 Female, age 91, left hemisphere 36.4
1911 Female, age 85, right hemisphere 36.2
1898 Male, age 80, left hemisphere 34.9
2621 Female, age 67, right hemisphere 32.3
1855 Male, age 76, left hemisphere 27.8
Dentate gyrus
nTPM: 31.6
2528 Male, age 74, both hemispheres 37.2
2010 Male, age 76, both hemispheres 34.5
2246 Female, age 85, both hemispheres 33.0
1927 Female, age 91, both hemispheres 30.5
2530 Female, age 94, left hemisphere 27.3
2531 Female, age 67, both hemispheres 27.3
Entorhinal gyrus
nTPM: 33.1
2117 Female, age 91, right hemisphere 47.0
1938 Female, age 85, left hemisphere 33.2
1787 Male, age 76, left hemisphere 32.7
2764 Male, age 80, right hemisphere 29.1
2686 Male, age 75, right hemisphere 28.8
2613 Female, age 94, left hemisphere 27.7
Hippocampus, CA1
nTPM: 31.9
2527 Male, age 74, both hemispheres 36.3
2082 Female, age 91, right hemisphere 34.6
1873 Female, age 85, both hemispheres 33.1
2749 Male, age 80, left hemisphere 28.4
2045 Male, age 76, both hemispheres 27.1
Hippocampus, CA2
nTPM: 33.4
2249 Male, age 74, both hemispheres 37.3
1940 Female, age 85, left hemisphere 36.1
2113 Female, age 91, right hemisphere 35.9
1892 Male, age 76, both hemispheres 31.4
1963 Male, age 80, left hemisphere 30.6
2437 Female, age 94, left hemisphere 29.2
Hippocampus, CA3
nTPM: 30.8
2436 Male, age 74, both hemispheres 36.5
1891 Female, age 85, both hemispheres 33.7
1867 Male, age 76, both hemispheres 29.9
2620 Female, age 94, left hemisphere 29.0
2137 Male, age 80, left hemisphere 28.0
2861 Female, age 67, both hemispheres 27.9
Parahippocampal cortex
nTPM: 33.4
2250 Female, age 67, right hemisphere 40.0
2245 Female, age 91, both hemispheres 35.4
2018 Male, age 76, both hemispheres 35.1
2693 Female, age 94, both hemispheres 34.0
2532 Female, age 72, left hemisphere 33.8
1850 Male, age 80, both hemispheres 32.9
1990 Female, age 91, right hemisphere 32.5
2622 Female, age 67, right hemisphere 30.7
1933 Female, age 85, both hemispheres 30.5
2692 Male, age 74, both hemispheres 29.5
Perirhinal gyrus
nTPM: 33.7
2521 Female, age 94, right hemisphere 36.9
1841 Female, age 85, right hemisphere 35.0
1794 Male, age 80, right hemisphere 34.5
1847 Female, age 91, left hemisphere 31.4
2848 Male, age 76, right hemisphere 30.8
Subiculum
nTPM: 35.1
2729 Female, age 91, right hemisphere 41.7
2042 Male, age 76, both hemispheres 38.5
2619 Male, age 74, both hemispheres 34.7
2438 Female, age 94, left hemisphere 33.8
1977 Female, age 85, both hemispheres 32.6
1901 Male, age 80, both hemispheres 29.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 18.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.5
Samples: 255

Max nTPM: 37.3
Min nTPM: 3.9
Std nTPM: 5.7
Median nTPM: 17.9
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 37.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 36.0
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 34.4
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 34.3
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 33.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 32.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 32.0
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 32.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 31.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 31.1
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 30.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.2
FF:10153-102I9 76 years, female 53.1
FF:10169-103B7 60 years, female 35.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 0.6
Pig sample Sample description nTPM
Subiculum
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.7
Sample C Male 0.7
Sample D Male 0.8
Dorsal hippocampus
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.7
Sample C Male 0.5
Sample D Male 0.3
Entorhinal cortex
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.4
Sample D Male 0.9
Ventral hippocampus
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.2
Sample A Female 0.6
Sample B Female 0.9
Sample C Male 0.4
Sample D Male 0.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 79.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 79.4
Samples: 4

Max nTPM: 86.8
Min nTPM: 68.6
Sample A Male 86.8
Sample B Male 82.4
Sample C Female 79.9
Sample D Female 68.6
Hippocampal formation
nTPM: 76.8
Samples: 4

Max nTPM: 87.2
Min nTPM: 72.3
Sample A Male 87.2
Sample B Male 72.3
Sample C Female 73.5
Sample D Female 74.2

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