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  • PEBP1
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:311.7 nTPM
GTEx:311.7 nTPM
FANTOM5:545.7 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 311.7
Samples: 105

Max nTPM: 418.0
Min nTPM: 223.0
Std nTPM: 41.8
Median nTPM:
452_1 88 years, female 418.0
377_1 82 years, female 415.0
322_1 76 years, male 409.1
2_1 77 years, female 408.4
506_1 65 years, male 397.0
139_1 64 years, female 388.4
376_1 75 years, female 379.1
17_1 71 years, male 377.1
501_1 88 years, male 368.7
384_1 83 years, male 365.1
319_1 81 years, male 362.1
320_1 89 years, female 361.8
153_1 70 years, female 360.5
394_1 75 years, female 359.6
351_1 91 years, male 356.8
4_1 88 years, female 349.4
321_1 62 years, female 349.0
518_1 75 years, female 346.3
379_1 60 years, male 346.0
264_1 73 years, female 345.7
35_1 74 years, female 345.5
109_1 81 years, female 345.0
386_1 76 years, male 343.4
353_1 82 years, female 342.1
163_1 78 years, male 340.5
396_1 62 years, male 340.5
288_1 66 years, female 338.9
315_1 62 years, female 338.8
354_1 81 years, female 338.6
389_1 86 years, female 338.3
316_1 62 years, male 338.2
375_1 74 years, female 336.3
405_1 91 years, male 334.8
404_1 82 years, female 334.2
189_1 76 years, male 333.7
251_1 78 years, male 328.5
18_1 88 years, male 325.7
413_1 59 years, female 324.9
137_1 83 years, male 322.4
335_1 73 years, female 321.1
292_1 71 years, male 320.0
6_1 73 years, female 319.7
177_1 74 years, male 319.0
293_1 68 years, female 318.9
406_1 79 years, male 318.6
120_1 70 years, female 318.4
145_1 84 years, male 314.8
526_1 61 years, male 313.8
286_1 68 years, female 313.6
295_1 61 years, female 310.7
254_1 77 years, female 310.1
313_1 79 years, female 309.8
503_1 68 years, male 309.7
265_1 87 years, male 307.3
349_1 83 years, male 306.6
246_1 77 years, male 306.1
356_1 87 years, female 305.9
517_1 88 years, male 305.1
126_1 63 years, male 303.6
425_1 59 years, female 302.9
350_1 84 years, female 301.1
237_1 82 years, male 299.7
115_1 83 years, male 299.2
468_1 89 years, male 298.3
480_1 63 years, male 297.9
243_1 75 years, male 297.2
348_1 84 years, male 296.6
495_1 57 years, female 296.0
42_1 85 years, male 295.6
41_1 94 years, female 295.2
81_1 67 years, male 291.9
447_1 81 years, male 290.7
266_1 85 years, male 289.3
352_1 62 years, male 288.5
229_1 69 years, female 288.2
142_1 61 years, female 287.4
414_1 84 years, female 286.2
99_1 64 years, male 285.4
355_1 70 years, female 285.2
499_1 55 years, female 284.5
314_1 67 years, male 280.0
173_1 67 years, male 279.6
311_1 78 years, male 278.1
318_1 68 years, male 275.7
119_1 70 years, female 274.7
291_1 76 years, male 273.8
172_1 72 years, female 269.4
307_1 66 years, female 266.7
117_1 61 years, male 266.2
324_1 76 years, male 265.6
9_1 66 years, female 262.1
217_1 76 years, male 261.8
218_1 71 years, female 261.8
89_1 63 years, male 258.2
466_1 57 years, female 256.9
415_1 77 years, female 255.5
347_1 72 years, male 252.1
491_1 89 years, female 251.2
43_1 64 years, female 247.7
317_1 60 years, male 247.0
162_1 79 years, female 245.0
149_1 88 years, male 243.1
32_1 67 years, male 242.8
308_1 70 years, female 226.5
490_1 67 years, female 223.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

545.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 545.7
FF:10030-101E3 24-65 years, mixed 545.7

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