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MLF2
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MLF2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:252.8 nTPM
FANTOM5:113.7 Scaled Tags Per Million
Pig:270.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA010811Antibody HPA010859
Glial cells MediumMedium
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 252.8
Samples: 300

Max nTPM: 461.4
Min nTPM: 108.9
Std nTPM: 68.5
Median nTPM: 254.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 461.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 461.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 436.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 430.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 408.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 406.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 404.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 403.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 390.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 385.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 377.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 375.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 373.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 368.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 365.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 363.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 361.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 360.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 360.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 359.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 354.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 352.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 352.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 352.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 349.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 348.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 346.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 344.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 344.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 344.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 343.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 342.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 338.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 337.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 337.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 336.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 335.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 335.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 331.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 330.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 329.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 327.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 326.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 326.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 323.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 323.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 323.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 322.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 321.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 319.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 318.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 317.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 317.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 316.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 316.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 315.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 314.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 314.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 313.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 313.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 312.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 310.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 310.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 309.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 307.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 307.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 304.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 303.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 303.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 303.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 300.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 300.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 299.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 299.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 298.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 296.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 296.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 296.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 296.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 296.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 295.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 295.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 295.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 293.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 292.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 292.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 291.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 291.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 291.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 290.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 289.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 289.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 288.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 288.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 287.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 287.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 284.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 282.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 281.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 281.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 280.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 280.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 279.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 279.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 279.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 279.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 278.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 277.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 277.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 276.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 276.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 275.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 275.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 275.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 274.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 274.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 273.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 271.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 270.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 270.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 270.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 269.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 269.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 268.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 268.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 267.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 267.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 266.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 264.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 264.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 263.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 262.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 260.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 259.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 259.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 259.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 259.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 259.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 258.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 257.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 256.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 256.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 256.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 256.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 256.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 255.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 255.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 255.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 254.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 254.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 254.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 254.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 253.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 252.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 251.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 249.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 248.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 247.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 247.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 246.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 245.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 244.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 244.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 244.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 244.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 243.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 240.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 239.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 238.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 237.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 237.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 237.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 237.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 236.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 236.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 236.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 234.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 233.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 233.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 232.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 232.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 232.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 232.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 231.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 229.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 226.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 225.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 225.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 224.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 224.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 224.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 224.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 223.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 223.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 221.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 219.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 218.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 217.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 217.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 216.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 216.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 215.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 212.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 212.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 210.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 209.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 209.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 209.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 209.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 209.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 209.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 209.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 208.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 207.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 207.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 206.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 206.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 205.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 205.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 204.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 203.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 202.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 201.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 201.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 201.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 200.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 198.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 198.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 197.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 196.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 194.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 193.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 193.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 191.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 191.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 190.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 190.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 189.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 188.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 188.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 185.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 185.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 185.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 183.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 182.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 182.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 182.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 182.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 180.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 180.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 179.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 179.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 179.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 178.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 178.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 177.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 177.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 176.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 176.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 175.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 175.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 173.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 172.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 171.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 171.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 165.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 165.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 164.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 164.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 164.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 164.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 162.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 161.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 160.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 160.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 159.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 158.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 156.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 156.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 155.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 154.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 154.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 153.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 152.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 151.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 149.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 148.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 148.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 143.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 142.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 137.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 135.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 132.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 129.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 127.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 126.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 124.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 121.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 108.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 113.7
FF:10164-103B2 76 years, female 113.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.0
Pig sample Sample description nTPM
Caudate
nTPM: 270.0
Samples: 4

Max nTPM: 332.6
Min nTPM: 224.4
Sample A Female 224.4
Sample B Female 289.2
Sample C Male 332.6
Sample D Male 233.7

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