MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.7 nTPM
HPA Brain:9.8 nTPM
GTEx:66.7 nTPM
FANTOM5:231.5 Scaled Tags Per Million
Pig:77.7 nTPM
Mouse:151.4 nTPM
Allen mouse:13.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.6
1833 Male, age 53, unknown 8.6
1827 Male, age 72, unknown 8.3
2019 Male, age 18, unknown 8.3
2828 Female, age 72, unknown 6.7
1830 Male, age 51, unknown 6.3
2586 Male, age 75, left hemisphere 6.2
2219 Male, age 76, both hemispheres 6.0
2411 Female, age 72, unknown 5.7
2666 Male, age 74, left hemisphere 5.7
1870 Female, age 42, unknown 4.0
Dorsal raphe nucleus
nTPM: 5.2
1828 Male, age 53, unknown 6.2
2047 Male, age 72, unknown 5.7
2298 Female, age 72, unknown 5.5
2750 Male, age 76, both hemispheres 4.4
2016 Female, age 72, unknown 4.3
Inferior colliculus
nTPM: 6.3
1848 Female, age 42, unknown 7.5
2849 Male, age 72, unknown 7.2
1890 Male, age 53, unknown 5.9
2097 Female, age 72, unknown 4.5
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Periaquaductal grey, anterior
nTPM: 9.8
1795 Male, age 51, unknown 13.7
2502 Female, age 75, unknown 9.0
1947 Male, age 18, unknown 6.8
Periaquaductal grey, dorsal
nTPM: 5.0
2464 Female, age 72, unknown 5.9
1840 Male, age 53, unknown 5.5
1831 Male, age 72, unknown 4.6
2850 Male, age 76, both hemispheres 4.0
Periaquaductal grey, lateral
nTPM: 7.3
2053 Male, age 18, unknown 10.8
2140 Male, age 76, both hemispheres 6.5
2272 Male, age 74, both hemispheres 4.6
Pretectal area
nTPM: 8.1
2224 Female, age 72, unknown 10.4
1944 Female, age 72, unknown 10.3
2316 Male, age 76, right hemisphere 9.2
1816 Male, age 51, unknown 8.9
2407 Male, age 75, both hemispheres 8.5
2273 Male, age 74, both hemispheres 8.3
1817 Female, age 42, unknown 8.1
2007 Male, age 72, unknown 6.9
2667 Female, age 75, unknown 6.7
1815 Male, age 53, unknown 5.8
2825 Male, age 18, unknown 5.8
Red nucleus
nTPM: 5.9
2725 Female, age 75, unknown 8.7
1904 Male, age 53, unknown 8.0
2227 Male, age 72, unknown 6.0
2584 Male, age 75, left hemisphere 6.0
2785 Male, age 18, unknown 6.0
2503 Female, age 72, unknown 5.7
2769 Male, age 72, unknown 5.7
2588 Male, age 74, left hemisphere 5.3
1954 Female, age 42, unknown 5.2
2823 Male, age 76, right hemisphere 5.2
1821 Female, age 72, unknown 4.8
1865 Male, age 51, unknown 4.4
Substantia nigra
nTPM: 6.4
1889 Female, age 72, unknown 10.7
2583 Male, age 75, right hemisphere 8.0
1916 Female, age 42, unknown 7.3
1941 Male, age 53, unknown 6.9
2590 Female, age 75, unknown 6.3
2665 Male, age 74, both hemispheres 5.6
2409 Female, age 72, unknown 5.3
2699 Male, age 18, unknown 5.1
1851 Male, age 51, unknown 4.4
2241 Male, age 72, unknown 4.1
Superior colliculus
nTPM: 6.3
1839 Male, age 51, unknown 6.9
1895 Male, age 76, right hemisphere 6.9
1995 Male, age 72, unknown 6.9
2261 Male, age 18, unknown 6.8
2587 Male, age 74, left hemisphere 6.6
2087 Female, age 72, unknown 6.2
2664 Male, age 75, both hemispheres 6.2
1796 Male, age 53, unknown 5.5
1913 Female, age 42, unknown 5.5
2668 Female, age 75, unknown 5.1
Ventral tegmental area
nTPM: 6.1
2410 Female, age 72, unknown 8.4
1915 Female, age 42, unknown 6.6
2218 Male, age 76, both hemispheres 6.4
1942 Male, age 51, unknown 5.9
2223 Female, age 72, unknown 5.8
2021 Male, age 53, unknown 3.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.7
Samples: 183

Max nTPM: 171.5
Min nTPM: 38.9
Std nTPM: 19.2
Median nTPM: 61.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 171.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 147.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 113.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 112.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 108.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 107.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 106.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 104.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 103.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 101.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 98.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 231.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 231.5
FF:10158-103A5 76 years, female 231.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 77.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.3
Samples: 4

Max nTPM: 79.2
Min nTPM: 33.5
Sample A Female 78.7
Sample B Female 49.8
Sample C Male 79.2
Sample D Male 33.5
Midbrain
nTPM: 73.2
Samples: 4

Max nTPM: 101.8
Min nTPM: 48.7
Sample A Female 48.7
Sample B Female 59.6
Sample C Male 101.8
Sample D Male 82.7
Periaqueductal gray
nTPM: 64.4
Samples: 3

Max nTPM: 76.4
Min nTPM: 57.6
Sample B Female 59.1
Sample C Male 76.4
Sample D Male 57.6
Superior colliculi
nTPM: 77.7
Samples: 4

Max nTPM: 92.4
Min nTPM: 63.5
Sample A Female 79.7
Sample B Female 63.5
Sample C Male 92.4
Sample D Male 75.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 151.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.4
Samples: 4

Max nTPM: 155.9
Min nTPM: 147.0
Sample A Male 147.0
Sample B Male 152.2
Sample C Female 155.9
Sample D Female 150.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
69014542 Antisense, RP_050310_01_C10, Mouse strain C57BL/6J (56 days, male) 13.7

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