MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:96.2 nTPM
HPA Brain:137.8 nTPM
GTEx:96.2 nTPM
FANTOM5:167.6 Scaled Tags Per Million
Pig:132.9 nTPM
Mouse:69.4 nTPM
Allen mouse:15.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 137.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.9
2411 Female, age 72, unknown 133.0
1833 Male, age 53, unknown 130.1
1830 Male, age 51, unknown 128.7
2019 Male, age 18, unknown 124.7
1870 Female, age 42, unknown 123.2
2586 Male, age 75, left hemisphere 116.9
2828 Female, age 72, unknown 111.6
2219 Male, age 76, both hemispheres 102.6
1827 Male, age 72, unknown 100.6
2666 Male, age 74, left hemisphere 87.4
Dorsal raphe nucleus
nTPM: 96.4
2750 Male, age 76, both hemispheres 138.2
1828 Male, age 53, unknown 94.8
2016 Female, age 72, unknown 88.1
2047 Male, age 72, unknown 88.1
2298 Female, age 72, unknown 72.8
Inferior colliculus
nTPM: 86.9
2849 Male, age 72, unknown 91.7
1890 Male, age 53, unknown 90.0
1848 Female, age 42, unknown 87.9
2097 Female, age 72, unknown 78.1
Median raphe nucleus
nTPM: 90.2
2220 Male, age 76, midline 90.2
Periaquaductal grey, anterior
nTPM: 80.9
1947 Male, age 18, unknown 87.8
2502 Female, age 75, unknown 79.1
1795 Male, age 51, unknown 75.8
Periaquaductal grey, dorsal
nTPM: 76.2
2464 Female, age 72, unknown 96.6
1831 Male, age 72, unknown 79.8
2850 Male, age 76, both hemispheres 71.0
1840 Male, age 53, unknown 57.6
Periaquaductal grey, lateral
nTPM: 81.2
2272 Male, age 74, both hemispheres 85.7
2053 Male, age 18, unknown 81.1
2140 Male, age 76, both hemispheres 76.7
Pretectal area
nTPM: 93.5
2407 Male, age 75, both hemispheres 117.0
2316 Male, age 76, right hemisphere 116.6
1815 Male, age 53, unknown 110.5
1817 Female, age 42, unknown 98.2
2007 Male, age 72, unknown 93.5
2825 Male, age 18, unknown 93.2
2667 Female, age 75, unknown 93.0
2224 Female, age 72, unknown 85.2
2273 Male, age 74, both hemispheres 82.3
1944 Female, age 72, unknown 73.4
1816 Male, age 51, unknown 65.7
Red nucleus
nTPM: 137.8
1865 Male, age 51, unknown 156.7
1904 Male, age 53, unknown 156.6
2823 Male, age 76, right hemisphere 154.3
2769 Male, age 72, unknown 150.2
2227 Male, age 72, unknown 145.6
2588 Male, age 74, left hemisphere 143.0
2785 Male, age 18, unknown 139.0
1954 Female, age 42, unknown 132.6
1821 Female, age 72, unknown 130.2
2503 Female, age 72, unknown 124.8
2725 Female, age 75, unknown 114.4
2584 Male, age 75, left hemisphere 106.0
Substantia nigra
nTPM: 83.3
2583 Male, age 75, right hemisphere 115.2
2590 Female, age 75, unknown 95.6
1851 Male, age 51, unknown 91.8
1889 Female, age 72, unknown 87.0
2409 Female, age 72, unknown 87.0
2699 Male, age 18, unknown 85.4
1941 Male, age 53, unknown 75.2
2665 Male, age 74, both hemispheres 73.1
1916 Female, age 42, unknown 65.3
2241 Male, age 72, unknown 57.1
Superior colliculus
nTPM: 103.4
1995 Male, age 72, unknown 132.7
1913 Female, age 42, unknown 129.4
1895 Male, age 76, right hemisphere 121.8
2668 Female, age 75, unknown 105.1
1839 Male, age 51, unknown 102.4
2664 Male, age 75, both hemispheres 102.2
2587 Male, age 74, left hemisphere 98.3
1796 Male, age 53, unknown 91.5
2261 Male, age 18, unknown 80.2
2087 Female, age 72, unknown 70.0
Ventral tegmental area
nTPM: 93.6
2223 Female, age 72, unknown 114.9
2410 Female, age 72, unknown 104.0
1942 Male, age 51, unknown 95.4
2021 Male, age 53, unknown 89.7
1915 Female, age 42, unknown 78.9
2218 Male, age 76, both hemispheres 78.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 96.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.2
Samples: 183

Max nTPM: 369.0
Min nTPM: 33.1
Std nTPM: 43.1
Median nTPM: 87.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 369.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 264.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 252.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 236.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 206.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 193.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 178.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 175.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 169.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 167.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 160.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 167.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.6
FF:10158-103A5 76 years, female 167.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 132.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.1
Samples: 4

Max nTPM: 183.6
Min nTPM: 91.4
Sample A Female 132.9
Sample B Female 91.4
Sample C Male 120.3
Sample D Male 183.6
Midbrain
nTPM: 132.9
Samples: 4

Max nTPM: 228.4
Min nTPM: 87.0
Sample A Female 228.4
Sample B Female 120.4
Sample C Male 95.7
Sample D Male 87.0
Periaqueductal gray
nTPM: 89.7
Samples: 3

Max nTPM: 98.7
Min nTPM: 81.6
Sample B Female 98.7
Sample C Male 81.6
Sample D Male 88.9
Superior colliculi
nTPM: 118.9
Samples: 4

Max nTPM: 133.0
Min nTPM: 103.8
Sample A Female 121.2
Sample B Female 103.8
Sample C Male 117.4
Sample D Male 133.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 69.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 76.3
Min nTPM: 65.7
Sample A Male 76.3
Sample B Male 65.7
Sample C Female 66.5
Sample D Female 69.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.2
67936208 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 15.2
68196977 Antisense, RP_040928_01_A08, Mouse strain C57BL/6J (56 days, male) 7.9

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