HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:25.7 nTPM
HPA Brain:78.4 nTPM
GTEx:25.7 nTPM
FANTOM5:78.6 Scaled Tags Per Million
Pig:34.5 nTPM
Mouse:80.3 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004055
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 78.4
Sample id Sample description nTPM
Hippocampus
nTPM: 78.4
2529 Female, age 94, left hemisphere 84.7
1855 Male, age 76, left hemisphere 80.5
1898 Male, age 80, left hemisphere 79.2
2621 Female, age 67, right hemisphere 78.1
1911 Female, age 85, right hemisphere 75.6
2148 Female, age 91, left hemisphere 72.4
Dentate gyrus
nTPM: 73.7
2530 Female, age 94, left hemisphere 98.9
2010 Male, age 76, both hemispheres 76.9
2246 Female, age 85, both hemispheres 73.8
2528 Male, age 74, both hemispheres 73.1
1927 Female, age 91, both hemispheres 59.8
2531 Female, age 67, both hemispheres 59.6
Entorhinal gyrus
nTPM: 73.1
2117 Female, age 91, right hemisphere 92.8
2764 Male, age 80, right hemisphere 78.8
1938 Female, age 85, left hemisphere 73.5
2613 Female, age 94, left hemisphere 68.6
1787 Male, age 76, left hemisphere 65.4
2686 Male, age 75, right hemisphere 59.2
Hippocampus, CA1
nTPM: 71.5
1873 Female, age 85, both hemispheres 79.1
2527 Male, age 74, both hemispheres 76.1
2749 Male, age 80, left hemisphere 75.8
2045 Male, age 76, both hemispheres 64.1
2082 Female, age 91, right hemisphere 62.3
Hippocampus, CA2
nTPM: 73.6
2437 Female, age 94, left hemisphere 81.1
2249 Male, age 74, both hemispheres 79.2
1892 Male, age 76, both hemispheres 75.3
1963 Male, age 80, left hemisphere 72.2
1940 Female, age 85, left hemisphere 68.0
2113 Female, age 91, right hemisphere 65.7
Hippocampus, CA3
nTPM: 72.0
2436 Male, age 74, both hemispheres 84.2
1867 Male, age 76, both hemispheres 78.2
1891 Female, age 85, both hemispheres 77.8
2620 Female, age 94, left hemisphere 75.0
2137 Male, age 80, left hemisphere 60.4
2861 Female, age 67, both hemispheres 56.6
Parahippocampal cortex
nTPM: 67.0
2532 Female, age 72, left hemisphere 72.9
2018 Male, age 76, both hemispheres 72.4
2692 Male, age 74, both hemispheres 71.6
1990 Female, age 91, right hemisphere 69.2
1933 Female, age 85, both hemispheres 69.0
2250 Female, age 67, right hemisphere 68.1
1850 Male, age 80, both hemispheres 66.1
2245 Female, age 91, both hemispheres 62.6
2622 Female, age 67, right hemisphere 59.9
2693 Female, age 94, both hemispheres 57.8
Perirhinal gyrus
nTPM: 66.7
1794 Male, age 80, right hemisphere 73.6
2521 Female, age 94, right hemisphere 68.2
1847 Female, age 91, left hemisphere 65.9
1841 Female, age 85, right hemisphere 65.7
2848 Male, age 76, right hemisphere 59.9
Subiculum
nTPM: 77.1
2042 Male, age 76, both hemispheres 83.4
2438 Female, age 94, left hemisphere 81.0
1901 Male, age 80, both hemispheres 78.5
1977 Female, age 85, both hemispheres 76.1
2619 Male, age 74, both hemispheres 73.0
2729 Female, age 91, right hemisphere 70.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 25.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.7
Samples: 255

Max nTPM: 48.8
Min nTPM: 12.4
Std nTPM: 6.0
Median nTPM: 25.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 48.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 46.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 43.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 41.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 40.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 40.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 39.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 37.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 37.3
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 36.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 36.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.6
FF:10153-102I9 76 years, female 82.5
FF:10169-103B7 60 years, female 74.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 34.5
Pig sample Sample description nTPM
Subiculum
nTPM: 30.6
Samples: 4

Max nTPM: 36.9
Min nTPM: 26.8
Sample A Female 36.9
Sample B Female 29.4
Sample C Male 29.3
Sample D Male 26.8
Dorsal hippocampus
nTPM: 34.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 25.2
Sample A Female 45.0
Sample B Female 31.1
Sample C Male 36.8
Sample D Male 25.2
Entorhinal cortex
nTPM: 30.6
Samples: 4

Max nTPM: 31.8
Min nTPM: 27.6
Sample A Female 31.3
Sample B Female 31.8
Sample C Male 31.5
Sample D Male 27.6
Ventral hippocampus
nTPM: 32.2
Samples: 4

Max nTPM: 39.1
Min nTPM: 24.1
Sample A Female 34.2
Sample B Female 24.1
Sample C Male 39.1
Sample D Male 31.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 80.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 80.4
Samples: 4

Max nTPM: 87.4
Min nTPM: 73.3
Sample A Male 77.5
Sample B Male 87.4
Sample C Female 83.2
Sample D Female 73.3
Hippocampal formation
nTPM: 78.5
Samples: 4

Max nTPM: 92.6
Min nTPM: 69.2
Sample A Male 92.6
Sample B Male 73.7
Sample C Female 69.2
Sample D Female 78.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
74357658 Antisense, RP_060119_03_B12, Mouse strain C57BL/6J (56 days, male) 8.7

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