MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA Brain:72.7 nTPM
GTEx:21.3 nTPM
FANTOM5:166.8 Scaled Tags Per Million
Pig:68.6 nTPM
Mouse:61.5 nTPM
Allen mouse:12.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.2
2586 Male, age 75, left hemisphere 72.9
2828 Female, age 72, unknown 68.9
2666 Male, age 74, left hemisphere 68.6
1870 Female, age 42, unknown 66.1
2019 Male, age 18, unknown 65.2
1827 Male, age 72, unknown 63.8
2411 Female, age 72, unknown 63.8
1833 Male, age 53, unknown 60.4
1830 Male, age 51, unknown 59.7
2219 Male, age 76, both hemispheres 52.1
Dorsal raphe nucleus
nTPM: 63.7
2298 Female, age 72, unknown 65.7
1828 Male, age 53, unknown 64.3
2016 Female, age 72, unknown 63.8
2047 Male, age 72, unknown 62.9
2750 Male, age 76, both hemispheres 61.9
Inferior colliculus
nTPM: 60.4
1848 Female, age 42, unknown 64.0
1890 Male, age 53, unknown 60.8
2097 Female, age 72, unknown 59.4
2849 Male, age 72, unknown 57.5
Median raphe nucleus
nTPM: 58.5
2220 Male, age 76, midline 58.5
Periaquaductal grey, anterior
nTPM: 72.7
2502 Female, age 75, unknown 83.3
1947 Male, age 18, unknown 69.6
1795 Male, age 51, unknown 65.3
Periaquaductal grey, dorsal
nTPM: 64.2
1840 Male, age 53, unknown 69.5
2464 Female, age 72, unknown 64.1
2850 Male, age 76, both hemispheres 63.1
1831 Male, age 72, unknown 59.8
Periaquaductal grey, lateral
nTPM: 59.0
2140 Male, age 76, both hemispheres 64.3
2053 Male, age 18, unknown 63.2
2272 Male, age 74, both hemispheres 49.4
Pretectal area
nTPM: 64.3
1816 Male, age 51, unknown 69.6
2667 Female, age 75, unknown 69.4
2407 Male, age 75, both hemispheres 67.8
2825 Male, age 18, unknown 65.0
1944 Female, age 72, unknown 64.0
2007 Male, age 72, unknown 63.4
2316 Male, age 76, right hemisphere 63.3
2273 Male, age 74, both hemispheres 62.5
2224 Female, age 72, unknown 61.4
1817 Female, age 42, unknown 61.0
1815 Male, age 53, unknown 60.1
Red nucleus
nTPM: 61.2
2584 Male, age 75, left hemisphere 68.2
1821 Female, age 72, unknown 65.2
2588 Male, age 74, left hemisphere 63.8
2503 Female, age 72, unknown 61.4
2725 Female, age 75, unknown 61.0
1954 Female, age 42, unknown 60.9
2227 Male, age 72, unknown 60.8
1904 Male, age 53, unknown 60.3
1865 Male, age 51, unknown 59.7
2785 Male, age 18, unknown 59.3
2769 Male, age 72, unknown 58.5
2823 Male, age 76, right hemisphere 55.3
Substantia nigra
nTPM: 65.4
2241 Male, age 72, unknown 82.3
1916 Female, age 42, unknown 71.5
1851 Male, age 51, unknown 69.0
2583 Male, age 75, right hemisphere 65.5
1941 Male, age 53, unknown 63.4
1889 Female, age 72, unknown 62.7
2409 Female, age 72, unknown 62.2
2665 Male, age 74, both hemispheres 60.2
2699 Male, age 18, unknown 59.5
2590 Female, age 75, unknown 57.7
Superior colliculus
nTPM: 65.5
2664 Male, age 75, both hemispheres 78.6
2261 Male, age 18, unknown 68.7
2087 Female, age 72, unknown 65.6
1796 Male, age 53, unknown 65.5
1839 Male, age 51, unknown 64.9
1895 Male, age 76, right hemisphere 64.7
1913 Female, age 42, unknown 63.3
1995 Male, age 72, unknown 62.7
2587 Male, age 74, left hemisphere 61.5
2668 Female, age 75, unknown 59.2
Ventral tegmental area
nTPM: 63.3
1942 Male, age 51, unknown 67.2
2021 Male, age 53, unknown 67.2
2410 Female, age 72, unknown 65.5
1915 Female, age 42, unknown 64.5
2218 Male, age 76, both hemispheres 58.3
2223 Female, age 72, unknown 56.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.3
Samples: 183

Max nTPM: 34.9
Min nTPM: 12.6
Std nTPM: 3.3
Median nTPM: 20.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 34.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 32.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 31.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 28.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 27.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 27.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 27.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 27.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 166.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 166.8
FF:10158-103A5 76 years, female 166.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.7
Samples: 4

Max nTPM: 74.4
Min nTPM: 59.0
Sample A Female 73.0
Sample B Female 60.5
Sample C Male 74.4
Sample D Male 59.0
Midbrain
nTPM: 68.6
Samples: 4

Max nTPM: 86.2
Min nTPM: 53.1
Sample A Female 69.1
Sample B Female 53.1
Sample C Male 86.2
Sample D Male 65.9
Periaqueductal gray
nTPM: 54.1
Samples: 3

Max nTPM: 61.5
Min nTPM: 48.4
Sample B Female 52.4
Sample C Male 61.5
Sample D Male 48.4
Superior colliculi
nTPM: 67.1
Samples: 4

Max nTPM: 71.1
Min nTPM: 64.2
Sample A Female 67.8
Sample B Female 65.3
Sample C Male 71.1
Sample D Male 64.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 68.8
Min nTPM: 48.9
Sample A Male 48.9
Sample B Male 64.1
Sample C Female 68.8
Sample D Female 64.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
77800925 Antisense, RP_070219_01_A09, Mouse strain C57BL/6J (56 days, male) 14.3
75042254 Antisense, RP_060412_02_C08, Mouse strain C57BL/6J (56 days, male) 14.2
532744 Antisense, RP_040825_02_A07, Mouse strain C57BL/6J (56 days, male) 7.6

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