MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.8 nTPM
HPA Brain:39.7 nTPM
GTEx:58.8 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:74.8 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
1827 Male, age 72, unknown 41.8
2019 Male, age 18, unknown 40.1
1870 Female, age 42, unknown 36.5
2666 Male, age 74, left hemisphere 36.4
2828 Female, age 72, unknown 36.4
2586 Male, age 75, left hemisphere 34.9
2411 Female, age 72, unknown 34.3
1833 Male, age 53, unknown 34.0
1830 Male, age 51, unknown 31.9
2219 Male, age 76, both hemispheres 31.5
Dorsal raphe nucleus
nTPM: 33.9
1828 Male, age 53, unknown 37.5
2298 Female, age 72, unknown 36.2
2047 Male, age 72, unknown 34.0
2750 Male, age 76, both hemispheres 31.8
2016 Female, age 72, unknown 30.2
Inferior colliculus
nTPM: 33.7
1890 Male, age 53, unknown 35.0
2097 Female, age 72, unknown 34.5
2849 Male, age 72, unknown 33.2
1848 Female, age 42, unknown 32.1
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Periaquaductal grey, anterior
nTPM: 34.5
1795 Male, age 51, unknown 37.5
2502 Female, age 75, unknown 34.3
1947 Male, age 18, unknown 31.8
Periaquaductal grey, dorsal
nTPM: 33.6
2850 Male, age 76, both hemispheres 37.9
1831 Male, age 72, unknown 35.2
1840 Male, age 53, unknown 31.2
2464 Female, age 72, unknown 29.9
Periaquaductal grey, lateral
nTPM: 34.6
2272 Male, age 74, both hemispheres 38.3
2140 Male, age 76, both hemispheres 34.7
2053 Male, age 18, unknown 30.7
Pretectal area
nTPM: 39.7
1817 Female, age 42, unknown 47.3
1816 Male, age 51, unknown 46.5
1944 Female, age 72, unknown 44.2
2007 Male, age 72, unknown 43.3
1815 Male, age 53, unknown 41.3
2667 Female, age 75, unknown 38.6
2825 Male, age 18, unknown 37.2
2224 Female, age 72, unknown 35.8
2273 Male, age 74, both hemispheres 35.6
2407 Male, age 75, both hemispheres 35.1
2316 Male, age 76, right hemisphere 31.2
Red nucleus
nTPM: 37.8
2503 Female, age 72, unknown 42.2
2725 Female, age 75, unknown 42.2
1821 Female, age 72, unknown 40.1
1865 Male, age 51, unknown 39.5
2785 Male, age 18, unknown 38.0
2823 Male, age 76, right hemisphere 37.8
1954 Female, age 42, unknown 36.4
2769 Male, age 72, unknown 36.4
2227 Male, age 72, unknown 35.9
1904 Male, age 53, unknown 35.6
2588 Male, age 74, left hemisphere 34.7
2584 Male, age 75, left hemisphere 34.5
Substantia nigra
nTPM: 39.7
1916 Female, age 42, unknown 52.8
1941 Male, age 53, unknown 46.5
1889 Female, age 72, unknown 42.0
2699 Male, age 18, unknown 40.5
1851 Male, age 51, unknown 39.3
2665 Male, age 74, both hemispheres 36.8
2583 Male, age 75, right hemisphere 36.4
2590 Female, age 75, unknown 36.1
2409 Female, age 72, unknown 34.1
2241 Male, age 72, unknown 33.0
Superior colliculus
nTPM: 36.3
2587 Male, age 74, left hemisphere 41.3
2087 Female, age 72, unknown 39.8
2261 Male, age 18, unknown 39.8
1895 Male, age 76, right hemisphere 36.2
2668 Female, age 75, unknown 36.1
1796 Male, age 53, unknown 35.9
1995 Male, age 72, unknown 34.8
1913 Female, age 42, unknown 33.8
1839 Male, age 51, unknown 32.7
2664 Male, age 75, both hemispheres 32.4
Ventral tegmental area
nTPM: 36.7
1915 Female, age 42, unknown 41.4
2218 Male, age 76, both hemispheres 41.4
2223 Female, age 72, unknown 37.3
2410 Female, age 72, unknown 35.9
1942 Male, age 51, unknown 33.5
2021 Male, age 53, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.8
Samples: 183

Max nTPM: 98.4
Min nTPM: 29.0
Std nTPM: 11.9
Median nTPM: 57.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 98.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 97.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 92.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 84.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 83.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 82.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 82.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 82.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 82.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 81.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.7
Samples: 4

Max nTPM: 31.5
Min nTPM: 27.8
Sample A Female 27.8
Sample B Female 28.5
Sample C Male 31.5
Sample D Male 30.8
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 40.0
Min nTPM: 29.9
Sample A Female 40.0
Sample B Female 31.8
Sample C Male 31.7
Sample D Male 29.9
Periaqueductal gray
nTPM: 30.4
Samples: 3

Max nTPM: 34.1
Min nTPM: 26.9
Sample B Female 34.1
Sample C Male 30.3
Sample D Male 26.9
Superior colliculi
nTPM: 33.5
Samples: 4

Max nTPM: 36.7
Min nTPM: 30.7
Sample A Female 33.6
Sample B Female 30.7
Sample C Male 36.7
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 77.4
Min nTPM: 72.3
Sample A Male 77.4
Sample B Male 73.1
Sample C Female 72.3
Sample D Female 76.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
69014949 Antisense, RP_050310_02_A09, Mouse strain C57BL/6J (56 days, male) 8.7

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