MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.4 nTPM
HPA Brain:8.0 nTPM
GTEx:13.4 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:45.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.0
1870 Female, age 42, unknown 7.8
2019 Male, age 18, unknown 7.0
2411 Female, age 72, unknown 6.8
2219 Male, age 76, both hemispheres 6.6
1827 Male, age 72, unknown 6.3
2828 Female, age 72, unknown 5.6
1833 Male, age 53, unknown 5.4
2586 Male, age 75, left hemisphere 5.3
2666 Male, age 74, left hemisphere 5.2
1830 Male, age 51, unknown 3.8
Dorsal raphe nucleus
nTPM: 6.4
2047 Male, age 72, unknown 7.9
1828 Male, age 53, unknown 7.0
2016 Female, age 72, unknown 5.9
2750 Male, age 76, both hemispheres 5.7
2298 Female, age 72, unknown 5.4
Inferior colliculus
nTPM: 6.1
1848 Female, age 42, unknown 6.9
2097 Female, age 72, unknown 6.4
1890 Male, age 53, unknown 6.1
2849 Male, age 72, unknown 4.8
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Periaquaductal grey, anterior
nTPM: 7.3
1947 Male, age 18, unknown 8.3
2502 Female, age 75, unknown 7.0
1795 Male, age 51, unknown 6.6
Periaquaductal grey, dorsal
nTPM: 6.2
1840 Male, age 53, unknown 6.7
2464 Female, age 72, unknown 6.4
1831 Male, age 72, unknown 6.1
2850 Male, age 76, both hemispheres 5.6
Periaquaductal grey, lateral
nTPM: 5.8
2272 Male, age 74, both hemispheres 6.0
2140 Male, age 76, both hemispheres 5.8
2053 Male, age 18, unknown 5.5
Pretectal area
nTPM: 8.0
1817 Female, age 42, unknown 11.4
1816 Male, age 51, unknown 11.2
2007 Male, age 72, unknown 10.5
1815 Male, age 53, unknown 8.3
1944 Female, age 72, unknown 7.5
2407 Male, age 75, both hemispheres 6.9
2667 Female, age 75, unknown 6.9
2224 Female, age 72, unknown 6.7
2273 Male, age 74, both hemispheres 6.4
2316 Male, age 76, right hemisphere 6.3
2825 Male, age 18, unknown 5.6
Red nucleus
nTPM: 5.7
1821 Female, age 72, unknown 8.0
2785 Male, age 18, unknown 6.6
2503 Female, age 72, unknown 6.5
2725 Female, age 75, unknown 6.3
1865 Male, age 51, unknown 6.1
2227 Male, age 72, unknown 5.8
2823 Male, age 76, right hemisphere 5.5
2584 Male, age 75, left hemisphere 5.4
2769 Male, age 72, unknown 5.3
2588 Male, age 74, left hemisphere 5.1
1904 Male, age 53, unknown 4.1
1954 Female, age 42, unknown 4.0
Substantia nigra
nTPM: 7.4
1851 Male, age 51, unknown 10.6
1916 Female, age 42, unknown 10.3
1941 Male, age 53, unknown 7.2
1889 Female, age 72, unknown 7.1
2665 Male, age 74, both hemispheres 7.0
2241 Male, age 72, unknown 6.8
2409 Female, age 72, unknown 6.7
2590 Female, age 75, unknown 6.3
2699 Male, age 18, unknown 6.0
2583 Male, age 75, right hemisphere 5.8
Superior colliculus
nTPM: 5.8
1796 Male, age 53, unknown 7.3
2668 Female, age 75, unknown 7.0
2087 Female, age 72, unknown 6.5
2261 Male, age 18, unknown 6.2
2664 Male, age 75, both hemispheres 5.8
2587 Male, age 74, left hemisphere 5.6
1895 Male, age 76, right hemisphere 5.4
1839 Male, age 51, unknown 5.2
1913 Female, age 42, unknown 4.7
1995 Male, age 72, unknown 4.4
Ventral tegmental area
nTPM: 5.7
1915 Female, age 42, unknown 7.1
2218 Male, age 76, both hemispheres 6.8
2410 Female, age 72, unknown 6.2
2021 Male, age 53, unknown 5.0
2223 Female, age 72, unknown 4.8
1942 Male, age 51, unknown 4.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 183

Max nTPM: 30.3
Min nTPM: 4.3
Std nTPM: 4.2
Median nTPM: 13.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 30.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 23.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 23.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 22.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 21.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 21.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 20.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 20.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.0
FF:10158-103A5 76 years, female 40.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.8
Samples: 4

Max nTPM: 43.4
Min nTPM: 32.3
Sample A Female 43.4
Sample B Female 34.9
Sample C Male 40.5
Sample D Male 32.3
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 41.5
Min nTPM: 35.1
Sample A Female 35.1
Sample B Female 37.9
Sample C Male 41.5
Sample D Male 37.8
Periaqueductal gray
nTPM: 33.4
Samples: 3

Max nTPM: 34.9
Min nTPM: 31.9
Sample B Female 31.9
Sample C Male 33.4
Sample D Male 34.9
Superior colliculi
nTPM: 35.2
Samples: 4

Max nTPM: 38.3
Min nTPM: 30.8
Sample A Female 35.7
Sample B Female 30.8
Sample C Male 38.3
Sample D Male 36.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.3
Samples: 4

Max nTPM: 46.0
Min nTPM: 44.4
Sample A Male 45.1
Sample B Male 46.0
Sample C Female 44.4
Sample D Female 45.5

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