We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MYL6
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MYL6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:505.0 nTPM
FANTOM5:204.5 Scaled Tags Per Million
Pig:295.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA046859Antibody HPA063034
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

505.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 505.0
Samples: 300

Max nTPM: 1285.3
Min nTPM: 219.6
Std nTPM: 148.1
Median nTPM: 472.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1285.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1157.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 989.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 931.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 909.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 897.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 893.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 892.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 864.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 834.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 827.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 814.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 805.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 796.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 793.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 793.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 790.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 787.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 787.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 786.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 772.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 772.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 770.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 753.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 749.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 745.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 735.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 734.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 709.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 707.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 696.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 695.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 675.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 672.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 669.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 665.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 664.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 661.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 661.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 639.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 634.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 634.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 633.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 633.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 632.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 628.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 627.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 622.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 618.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 618.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 616.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 614.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 612.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 608.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 605.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 604.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 603.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 601.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 598.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 598.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 597.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 597.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 596.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 596.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 595.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 593.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 592.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 591.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 584.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 583.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 583.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 579.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 579.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 577.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 577.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 574.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 570.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 570.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 568.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 568.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 567.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 562.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 561.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 561.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 559.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 555.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 554.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 552.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 551.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 550.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 544.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 544.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 543.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 543.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 541.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 540.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 539.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 536.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 536.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 535.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 534.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 528.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 527.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 527.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 522.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 522.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 520.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 516.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 516.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 516.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 514.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 514.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 513.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 511.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 509.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 509.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 508.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 506.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 506.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 505.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 500.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 500.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 497.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 496.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 496.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 496.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 496.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 494.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 492.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 490.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 490.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 490.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 489.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 489.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 488.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 488.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 487.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 487.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 486.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 486.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 484.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 481.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 480.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 479.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 477.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 476.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 476.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 475.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 472.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 472.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 472.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 471.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 470.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 468.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 468.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 467.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 466.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 465.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 463.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 462.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 461.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 460.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 459.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 459.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 459.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 459.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 458.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 457.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 456.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 456.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 455.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 455.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 451.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 450.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 449.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 448.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 446.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 445.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 445.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 444.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 443.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 442.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 442.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 441.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 441.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 441.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 440.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 439.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 438.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 438.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 437.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 437.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 436.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 436.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 434.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 434.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 434.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 434.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 434.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 433.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 433.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 431.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 430.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 430.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 428.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 428.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 428.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 427.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 426.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 426.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 426.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 426.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 423.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 423.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 420.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 420.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 420.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 420.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 419.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 417.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 417.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 416.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 416.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 415.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 414.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 412.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 411.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 411.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 410.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 408.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 407.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 407.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 404.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 403.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 403.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 399.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 399.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 395.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 394.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 393.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 391.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 390.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 388.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 386.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 386.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 383.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 382.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 377.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 377.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 375.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 375.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 373.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 372.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 371.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 370.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 370.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 370.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 368.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 366.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 365.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 363.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 362.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 358.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 356.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 356.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 352.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 350.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 350.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 350.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 348.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 347.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 344.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 344.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 343.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 340.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 338.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 335.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 335.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 334.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 334.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 331.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 329.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 328.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 324.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 321.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 319.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 318.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 317.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 317.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 316.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 315.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 315.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 314.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 304.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 299.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 296.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 291.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 262.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 256.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 219.6
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 204.5
FF:10164-103B2 76 years, female 204.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.0
Pig sample Sample description nTPM
Caudate
nTPM: 295.0
Samples: 4

Max nTPM: 351.7
Min nTPM: 253.9
Sample A Female 253.9
Sample B Female 307.5
Sample C Male 351.7
Sample D Male 267.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo