MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:778.6 nTPM
HPA Brain:314.0 nTPM
GTEx:778.6 nTPM
FANTOM5:236.1 Scaled Tags Per Million
Pig:546.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 314.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 261.1
2019 Male, age 18, unknown 306.1
1870 Female, age 42, unknown 295.0
1827 Male, age 72, unknown 294.3
2666 Male, age 74, left hemisphere 288.6
2411 Female, age 72, unknown 283.3
2828 Female, age 72, unknown 256.5
2219 Male, age 76, both hemispheres 248.3
1833 Male, age 53, unknown 222.2
1830 Male, age 51, unknown 216.4
2586 Male, age 75, left hemisphere 200.1
Dorsal raphe nucleus
nTPM: 281.1
2298 Female, age 72, unknown 309.2
2047 Male, age 72, unknown 308.1
2750 Male, age 76, both hemispheres 288.9
1828 Male, age 53, unknown 280.2
2016 Female, age 72, unknown 218.8
Inferior colliculus
nTPM: 240.8
1890 Male, age 53, unknown 270.0
2097 Female, age 72, unknown 267.5
2849 Male, age 72, unknown 216.2
1848 Female, age 42, unknown 209.5
Median raphe nucleus
nTPM: 314.0
2220 Male, age 76, midline 314.0
Periaquaductal grey, anterior
nTPM: 247.2
1795 Male, age 51, unknown 270.3
2502 Female, age 75, unknown 241.4
1947 Male, age 18, unknown 230.0
Periaquaductal grey, dorsal
nTPM: 252.1
2850 Male, age 76, both hemispheres 319.7
1831 Male, age 72, unknown 248.4
1840 Male, age 53, unknown 231.9
2464 Female, age 72, unknown 208.6
Periaquaductal grey, lateral
nTPM: 247.6
2140 Male, age 76, both hemispheres 288.9
2272 Male, age 74, both hemispheres 229.1
2053 Male, age 18, unknown 224.9
Pretectal area
nTPM: 299.2
1816 Male, age 51, unknown 387.2
1817 Female, age 42, unknown 384.2
2007 Male, age 72, unknown 367.6
1944 Female, age 72, unknown 344.2
1815 Male, age 53, unknown 336.8
2224 Female, age 72, unknown 275.0
2667 Female, age 75, unknown 263.2
2825 Male, age 18, unknown 246.2
2316 Male, age 76, right hemisphere 242.1
2273 Male, age 74, both hemispheres 232.5
2407 Male, age 75, both hemispheres 211.9
Red nucleus
nTPM: 286.0
2725 Female, age 75, unknown 327.1
2503 Female, age 72, unknown 324.9
2785 Male, age 18, unknown 323.0
1821 Female, age 72, unknown 312.0
1865 Male, age 51, unknown 311.9
1954 Female, age 42, unknown 281.1
2823 Male, age 76, right hemisphere 280.4
1904 Male, age 53, unknown 279.9
2588 Male, age 74, left hemisphere 272.4
2227 Male, age 72, unknown 257.6
2769 Male, age 72, unknown 257.1
2584 Male, age 75, left hemisphere 205.0
Substantia nigra
nTPM: 295.5
1916 Female, age 42, unknown 370.0
2409 Female, age 72, unknown 329.5
1889 Female, age 72, unknown 320.2
1851 Male, age 51, unknown 305.5
2665 Male, age 74, both hemispheres 305.1
1941 Male, age 53, unknown 301.5
2699 Male, age 18, unknown 281.8
2590 Female, age 75, unknown 265.7
2241 Male, age 72, unknown 256.4
2583 Male, age 75, right hemisphere 219.7
Superior colliculus
nTPM: 256.6
2087 Female, age 72, unknown 295.5
2587 Male, age 74, left hemisphere 294.1
1913 Female, age 42, unknown 281.5
2668 Female, age 75, unknown 276.0
2261 Male, age 18, unknown 273.0
1796 Male, age 53, unknown 266.7
1995 Male, age 72, unknown 247.6
1895 Male, age 76, right hemisphere 235.7
1839 Male, age 51, unknown 209.9
2664 Male, age 75, both hemispheres 186.1
Ventral tegmental area
nTPM: 279.0
2218 Male, age 76, both hemispheres 315.4
1915 Female, age 42, unknown 309.3
2410 Female, age 72, unknown 297.5
2223 Female, age 72, unknown 261.4
2021 Male, age 53, unknown 249.0
1942 Male, age 51, unknown 241.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 778.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 778.6
Samples: 183

Max nTPM: 2557.5
Min nTPM: 332.0
Std nTPM: 246.2
Median nTPM: 734.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2557.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1645.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1599.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1546.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1397.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1397.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1267.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1234.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1151.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1147.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1102.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 236.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 236.1
FF:10158-103A5 76 years, female 236.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 546.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 542.3
Samples: 4

Max nTPM: 673.0
Min nTPM: 384.7
Sample A Female 662.3
Sample B Female 673.0
Sample C Male 449.0
Sample D Male 384.7
Midbrain
nTPM: 489.0
Samples: 4

Max nTPM: 639.5
Min nTPM: 365.8
Sample A Female 639.5
Sample B Female 447.4
Sample C Male 503.2
Sample D Male 365.8
Periaqueductal gray
nTPM: 348.3
Samples: 3

Max nTPM: 396.4
Min nTPM: 296.2
Sample B Female 352.4
Sample C Male 396.4
Sample D Male 296.2
Superior colliculi
nTPM: 546.5
Samples: 4

Max nTPM: 621.3
Min nTPM: 466.5
Sample A Female 598.5
Sample B Female 621.3
Sample C Male 499.7
Sample D Male 466.5

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