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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:104.9 nTPM
FANTOM5:77.6 Scaled Tags Per Million
Pig:94.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001169Antibody CAB011233
Glial cells LowMedium
Neuronal cells MediumLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 104.9
Samples: 300

Max nTPM: 228.2
Min nTPM: 27.5
Std nTPM: 29.8
Median nTPM: 101.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 228.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 195.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 192.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 190.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 190.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 186.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 180.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 176.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 176.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 170.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 169.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 167.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 164.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 163.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 162.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 159.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 158.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 157.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 155.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 152.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 151.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 149.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 148.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 146.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 146.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 146.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 145.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 145.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 144.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 143.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 143.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 142.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 141.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 140.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 139.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 139.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 139.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 139.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 138.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 138.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 136.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 136.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 136.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 135.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 133.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 133.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 133.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 132.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 132.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 132.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 132.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 132.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 131.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 131.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 131.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 130.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 129.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 127.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 127.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 126.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 126.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 125.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 125.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 125.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 125.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 125.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 124.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 123.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 123.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 123.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 123.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 123.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 121.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 121.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 121.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 121.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 121.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 121.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 121.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 121.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 121.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 120.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 120.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 120.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 120.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 119.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 118.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 118.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 118.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 117.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 117.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 117.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 117.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 117.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 116.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 116.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 115.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 115.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 115.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 115.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 115.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 114.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 114.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 114.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 114.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 113.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 112.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 111.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 111.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 111.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 111.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 111.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 111.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 110.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 110.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 110.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 110.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 109.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 109.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 109.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 108.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 108.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 108.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 107.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 107.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 107.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 107.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 107.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 106.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 106.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 106.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 105.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 105.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 105.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 105.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 104.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 104.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 104.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 104.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 103.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 103.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 103.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 103.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 103.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 103.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 102.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 102.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 102.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 101.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 101.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 101.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 100.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 99.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 99.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 99.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 99.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 98.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 98.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 98.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 97.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 97.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 97.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 97.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 97.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 96.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 96.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 96.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 96.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 96.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 96.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 95.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 94.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 94.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 94.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 93.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 93.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 93.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 93.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 93.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 93.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 93.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 92.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 92.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 92.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 92.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 92.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 92.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 91.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 91.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 91.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 91.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 90.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 90.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 90.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 90.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 90.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 89.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 89.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 89.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 88.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 88.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 88.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 88.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 88.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 87.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 87.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 87.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 87.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 87.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 86.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 86.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 86.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 85.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 85.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 85.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 85.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 85.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 84.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 84.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 84.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 83.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 83.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 83.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 82.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 82.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 82.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 82.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 82.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 82.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 81.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 81.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 81.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 81.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 80.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 80.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 79.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 79.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 79.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 78.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 78.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 78.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 78.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 77.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 77.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 77.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 77.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 76.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 76.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 76.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 75.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 75.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 74.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 74.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 74.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 74.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 74.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 74.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 73.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 73.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 72.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 72.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 72.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 72.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 70.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 70.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 69.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 69.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 68.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 68.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 68.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 68.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 68.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 67.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 67.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 67.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 67.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 66.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 66.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 66.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 66.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 66.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 66.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 66.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 65.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 64.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 64.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 64.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 63.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 62.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 61.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 60.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 59.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 59.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 58.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 55.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 55.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 49.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 27.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 77.6
FF:10164-103B2 76 years, female 77.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.5
Pig sample Sample description nTPM
Caudate
nTPM: 94.5
Samples: 4

Max nTPM: 119.6
Min nTPM: 73.4
Sample A Female 73.4
Sample B Female 99.2
Sample C Male 119.6
Sample D Male 85.6

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