MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.1 nTPM
HPA Brain:60.2 nTPM
GTEx:36.1 nTPM
FANTOM5:98.9 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:19.4 nTPM
Allen mouse:2.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.4
2019 Male, age 18, unknown 71.6
1830 Male, age 51, unknown 63.1
1833 Male, age 53, unknown 59.7
2666 Male, age 74, left hemisphere 56.7
1870 Female, age 42, unknown 54.9
2411 Female, age 72, unknown 53.9
1827 Male, age 72, unknown 53.6
2828 Female, age 72, unknown 52.3
2586 Male, age 75, left hemisphere 49.2
2219 Male, age 76, both hemispheres 48.9
Dorsal raphe nucleus
nTPM: 47.1
2750 Male, age 76, both hemispheres 51.1
1828 Male, age 53, unknown 48.8
2016 Female, age 72, unknown 47.8
2047 Male, age 72, unknown 45.6
2298 Female, age 72, unknown 42.2
Inferior colliculus
nTPM: 51.4
2849 Male, age 72, unknown 59.0
1890 Male, age 53, unknown 49.9
1848 Female, age 42, unknown 49.8
2097 Female, age 72, unknown 47.1
Median raphe nucleus
nTPM: 56.6
2220 Male, age 76, midline 56.6
Periaquaductal grey, anterior
nTPM: 46.0
1947 Male, age 18, unknown 47.9
1795 Male, age 51, unknown 45.4
2502 Female, age 75, unknown 44.8
Periaquaductal grey, dorsal
nTPM: 49.2
2850 Male, age 76, both hemispheres 63.8
1831 Male, age 72, unknown 46.8
2464 Female, age 72, unknown 45.8
1840 Male, age 53, unknown 40.5
Periaquaductal grey, lateral
nTPM: 53.1
2272 Male, age 74, both hemispheres 59.5
2053 Male, age 18, unknown 50.1
2140 Male, age 76, both hemispheres 49.6
Pretectal area
nTPM: 53.6
1817 Female, age 42, unknown 61.2
2007 Male, age 72, unknown 59.7
1815 Male, age 53, unknown 59.1
2407 Male, age 75, both hemispheres 55.4
1816 Male, age 51, unknown 54.3
2667 Female, age 75, unknown 54.3
1944 Female, age 72, unknown 54.0
2224 Female, age 72, unknown 49.3
2825 Male, age 18, unknown 48.7
2273 Male, age 74, both hemispheres 47.2
2316 Male, age 76, right hemisphere 46.1
Red nucleus
nTPM: 60.2
2503 Female, age 72, unknown 72.2
1904 Male, age 53, unknown 68.9
1865 Male, age 51, unknown 65.2
2785 Male, age 18, unknown 62.3
1821 Female, age 72, unknown 59.0
2725 Female, age 75, unknown 58.6
2588 Male, age 74, left hemisphere 58.4
2769 Male, age 72, unknown 56.6
2823 Male, age 76, right hemisphere 56.6
1954 Female, age 42, unknown 56.2
2227 Male, age 72, unknown 54.3
2584 Male, age 75, left hemisphere 54.3
Substantia nigra
nTPM: 45.8
2409 Female, age 72, unknown 56.2
1889 Female, age 72, unknown 55.7
2583 Male, age 75, right hemisphere 54.0
1941 Male, age 53, unknown 46.7
2590 Female, age 75, unknown 44.9
2241 Male, age 72, unknown 41.6
2699 Male, age 18, unknown 41.6
2665 Male, age 74, both hemispheres 41.2
1851 Male, age 51, unknown 39.7
1916 Female, age 42, unknown 36.7
Superior colliculus
nTPM: 52.7
1913 Female, age 42, unknown 66.2
1995 Male, age 72, unknown 58.0
1895 Male, age 76, right hemisphere 57.9
2668 Female, age 75, unknown 54.7
2587 Male, age 74, left hemisphere 52.4
1839 Male, age 51, unknown 51.7
2087 Female, age 72, unknown 48.1
2261 Male, age 18, unknown 47.6
2664 Male, age 75, both hemispheres 45.6
1796 Male, age 53, unknown 45.0
Ventral tegmental area
nTPM: 47.6
2223 Female, age 72, unknown 59.3
2218 Male, age 76, both hemispheres 47.8
2021 Male, age 53, unknown 46.8
2410 Female, age 72, unknown 46.8
1942 Male, age 51, unknown 44.4
1915 Female, age 42, unknown 40.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.1
Samples: 183

Max nTPM: 99.7
Min nTPM: 20.9
Std nTPM: 11.7
Median nTPM: 33.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 99.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 80.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 67.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 67.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 66.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 65.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 62.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 57.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 98.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.9
FF:10158-103A5 76 years, female 98.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.5
Samples: 4

Max nTPM: 29.9
Min nTPM: 21.1
Sample A Female 22.1
Sample B Female 21.1
Sample C Male 24.8
Sample D Male 29.9
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.1
Sample A Female 25.0
Sample B Female 28.8
Sample C Male 22.1
Sample D Male 24.1
Periaqueductal gray
nTPM: 23.3
Samples: 3

Max nTPM: 26.7
Min nTPM: 21.6
Sample B Female 26.7
Sample C Male 21.7
Sample D Male 21.6
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 25.3
Min nTPM: 19.8
Sample A Female 21.8
Sample B Female 19.8
Sample C Male 25.1
Sample D Male 25.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 22.1
Min nTPM: 16.9
Sample A Male 16.9
Sample B Male 19.1
Sample C Female 19.4
Sample D Female 22.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68666732 Antisense, RP_050126_02_G12, Mouse strain C57BL/6J (56 days, male) 2.0

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