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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:64.0 nTPM
GTEx:64.0 nTPM
FANTOM5:62.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 64.0
Samples: 105

Max nTPM: 114.1
Min nTPM: 34.6
Std nTPM: 13.4
Median nTPM:
218_1 71 years, female 114.1
163_1 78 years, male 92.9
321_1 62 years, female 92.5
243_1 75 years, male 89.6
425_1 59 years, female 87.2
386_1 76 years, male 86.1
246_1 77 years, male 85.8
389_1 86 years, female 84.1
376_1 75 years, female 82.4
354_1 81 years, female 82.1
384_1 83 years, male 80.8
6_1 73 years, female 77.4
349_1 83 years, male 77.1
352_1 62 years, male 77.1
353_1 82 years, female 76.8
447_1 81 years, male 76.8
172_1 72 years, female 76.2
350_1 84 years, female 75.2
377_1 82 years, female 75.0
319_1 81 years, male 74.6
394_1 75 years, female 74.5
414_1 84 years, female 74.4
375_1 74 years, female 74.0
35_1 74 years, female 73.8
347_1 72 years, male 73.8
335_1 73 years, female 73.3
229_1 69 years, female 72.6
355_1 70 years, female 72.4
480_1 63 years, male 71.6
153_1 70 years, female 71.4
315_1 62 years, female 71.3
286_1 68 years, female 71.1
526_1 61 years, male 71.1
396_1 62 years, male 71.0
503_1 68 years, male 70.0
265_1 87 years, male 69.8
452_1 88 years, female 69.4
379_1 60 years, male 68.8
2_1 77 years, female 68.2
177_1 74 years, male 67.3
293_1 68 years, female 66.3
145_1 84 years, male 66.2
292_1 71 years, male 66.0
162_1 79 years, female 65.7
237_1 82 years, male 65.4
404_1 82 years, female 65.4
189_1 76 years, male 65.3
254_1 77 years, female 65.1
115_1 83 years, male 65.0
324_1 76 years, male 64.5
506_1 65 years, male 64.3
356_1 87 years, female 64.0
406_1 79 years, male 63.8
415_1 77 years, female 63.3
316_1 62 years, male 62.8
9_1 66 years, female 62.7
307_1 66 years, female 62.7
405_1 91 years, male 62.2
348_1 84 years, male 62.1
266_1 85 years, male 61.7
499_1 55 years, female 61.7
137_1 83 years, male 61.6
81_1 67 years, male 61.5
291_1 76 years, male 61.0
468_1 89 years, male 60.6
466_1 57 years, female 60.2
295_1 61 years, female 59.4
518_1 75 years, female 59.2
142_1 61 years, female 59.0
217_1 76 years, male 58.1
251_1 78 years, male 57.2
317_1 60 years, male 56.4
126_1 63 years, male 56.1
308_1 70 years, female 56.1
313_1 79 years, female 56.0
139_1 64 years, female 55.6
173_1 67 years, male 55.6
351_1 91 years, male 55.3
517_1 88 years, male 55.1
17_1 71 years, male 55.0
320_1 89 years, female 54.9
322_1 76 years, male 54.9
288_1 66 years, female 54.3
495_1 57 years, female 54.3
311_1 78 years, male 54.0
4_1 88 years, female 53.1
314_1 67 years, male 52.9
109_1 81 years, female 51.5
117_1 61 years, male 51.1
501_1 88 years, male 50.7
99_1 64 years, male 50.1
89_1 63 years, male 49.4
43_1 64 years, female 48.8
18_1 88 years, male 48.4
119_1 70 years, female 47.1
490_1 67 years, female 46.7
120_1 70 years, female 46.3
264_1 73 years, female 44.6
42_1 85 years, male 42.8
149_1 88 years, male 40.2
413_1 59 years, female 40.1
318_1 68 years, male 39.8
491_1 89 years, female 36.0
32_1 67 years, male 35.3
41_1 94 years, female 34.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 62.9
FF:10030-101E3 24-65 years, mixed 62.9

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