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HSP90AB1
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • HSP90AB1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:433.6 nTPM
FANTOM5:1478.5 Scaled Tags Per Million
Pig:434.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA072606Antibody HPA074351Antibody CAB005230
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedLowMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

433.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 433.6
Samples: 300

Max nTPM: 1916.5
Min nTPM: 205.2
Std nTPM: 182.3
Median nTPM: 394.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1916.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1345.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1286.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1186.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 988.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 946.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 936.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 908.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 874.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 867.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 848.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 844.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 821.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 810.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 801.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 763.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 757.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 705.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 689.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 656.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 647.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 645.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 641.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 638.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 638.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 634.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 632.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 624.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 615.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 614.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 610.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 607.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 588.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 577.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 571.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 571.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 571.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 570.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 569.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 563.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 556.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 556.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 549.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 546.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 542.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 540.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 536.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 533.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 531.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 528.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 526.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 525.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 522.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 522.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 517.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 517.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 516.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 512.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 512.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 508.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 507.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 507.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 500.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 493.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 492.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 489.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 489.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 488.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 486.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 486.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 483.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 483.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 483.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 483.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 483.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 482.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 480.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 479.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 477.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 477.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 474.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 474.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 470.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 470.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 469.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 469.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 467.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 464.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 463.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 461.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 461.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 457.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 456.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 456.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 455.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 454.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 452.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 449.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 449.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 448.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 447.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 446.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 444.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 443.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 442.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 440.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 439.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 437.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 437.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 434.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 433.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 432.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 430.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 430.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 428.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 428.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 426.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 425.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 419.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 419.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 418.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 418.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 417.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 415.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 414.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 414.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 413.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 413.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 412.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 411.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 410.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 409.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 408.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 408.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 407.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 406.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 405.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 405.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 405.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 405.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 403.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 403.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 401.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 401.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 397.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 397.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 396.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 396.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 396.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 395.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 392.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 392.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 391.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 391.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 389.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 389.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 387.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 386.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 385.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 385.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 384.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 383.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 382.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 382.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 382.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 378.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 377.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 376.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 376.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 375.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 374.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 374.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 372.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 371.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 371.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 370.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 370.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 370.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 369.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 368.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 368.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 367.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 366.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 366.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 366.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 365.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 364.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 364.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 362.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 362.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 361.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 361.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 360.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 359.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 359.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 358.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 355.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 354.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 354.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 353.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 352.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 351.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 350.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 350.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 346.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 345.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 345.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 342.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 342.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 341.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 341.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 340.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 340.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 339.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 338.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 337.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 337.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 337.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 336.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 335.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 331.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 330.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 329.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 329.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 329.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 328.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 327.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 326.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 325.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 324.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 322.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 321.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 321.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 320.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 316.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 316.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 316.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 316.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 315.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 314.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 312.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 312.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 312.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 311.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 310.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 309.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 307.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 306.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 306.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 305.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 305.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 304.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 303.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 302.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 300.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 297.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 297.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 297.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 296.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 295.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 295.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 295.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 294.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 292.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 292.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 291.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 291.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 290.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 284.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 282.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 281.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 279.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 278.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 274.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 272.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 266.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 263.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 260.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 260.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 258.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 257.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 256.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 254.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 254.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 251.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 249.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 249.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 249.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 246.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 245.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 245.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 244.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 244.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 241.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 236.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 236.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 231.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 223.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 222.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 205.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1478.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1478.5
FF:10164-103B2 76 years, female 1478.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.2
Pig sample Sample description nTPM
Caudate
nTPM: 434.2
Samples: 4

Max nTPM: 495.6
Min nTPM: 390.0
Sample A Female 413.7
Sample B Female 437.4
Sample C Male 495.6
Sample D Male 390.0

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