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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SCD
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:173.7 nTPM
FANTOM5:81.4 Scaled Tags Per Million
Pig:129.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA012107
Glial cells Medium
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 173.7
Samples: 300

Max nTPM: 861.1
Min nTPM: 54.0
Std nTPM: 90.4
Median nTPM: 151.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 861.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 573.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 475.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 405.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 391.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 390.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 388.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 375.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 365.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 360.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 357.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 356.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 354.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 351.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 349.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 348.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 336.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 333.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 332.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 332.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 329.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 326.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 324.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 319.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 304.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 296.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 295.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 294.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 287.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 282.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 281.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 281.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 274.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 271.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 271.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 270.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 269.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 266.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 266.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 261.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 252.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 250.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 250.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 248.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 247.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 245.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 245.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 245.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 244.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 244.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 244.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 242.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 242.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 241.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 240.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 237.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 235.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 235.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 235.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 234.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 225.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 225.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 222.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 222.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 222.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 221.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 220.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 219.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 219.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 214.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 213.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 213.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 211.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 211.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 210.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 210.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 207.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 207.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 205.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 205.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 205.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 205.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 201.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 199.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 199.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 197.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 197.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 197.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 196.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 196.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 196.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 196.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 195.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 195.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 194.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 194.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 192.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 192.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 192.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 191.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 190.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 189.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 189.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 189.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 188.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 186.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 186.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 186.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 185.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 183.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 182.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 182.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 182.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 182.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 181.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 181.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 181.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 181.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 180.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 180.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 179.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 178.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 178.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 175.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 173.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 172.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 171.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 171.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 170.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 170.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 167.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 161.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 161.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 161.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 160.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 160.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 159.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 157.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 156.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 156.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 156.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 155.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 155.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 154.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 153.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 152.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 152.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 152.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 152.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 150.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 149.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 149.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 149.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 148.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 148.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 148.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 147.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 146.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 146.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 145.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 144.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 144.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 142.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 142.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 142.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 142.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 142.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 142.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 141.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 141.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 140.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 140.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 140.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 140.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 140.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 139.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 138.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 138.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 138.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 137.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 137.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 137.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 137.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 136.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 136.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 135.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 135.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 134.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 134.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 133.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 133.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 132.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 132.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 131.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 131.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 131.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 131.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 130.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 129.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 128.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 127.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 127.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 127.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 126.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 126.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 126.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 126.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 125.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 124.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 123.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 123.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 122.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 122.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 121.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 121.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 121.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 120.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 120.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 119.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 119.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 118.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 118.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 117.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 116.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 116.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 113.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 113.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 112.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 111.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 110.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 108.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 107.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 106.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 106.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 105.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 104.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 103.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 103.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 102.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 102.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 101.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 100.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 100.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 100.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 99.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 98.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 97.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 95.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 95.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 95.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 95.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 95.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 94.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 94.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 93.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 93.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 93.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 92.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 91.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 90.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 90.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 88.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 86.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 85.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 85.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 84.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 84.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 83.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 83.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 80.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 78.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 78.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 77.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 77.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 76.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 76.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 76.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 74.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 74.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 73.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 73.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 73.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 72.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 71.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 70.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 70.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 70.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 69.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 69.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 68.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 67.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 67.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 66.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 65.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 63.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 62.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 62.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 54.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 54.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.4
FF:10164-103B2 76 years, female 81.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.5
Pig sample Sample description nTPM
Caudate
nTPM: 129.5
Samples: 4

Max nTPM: 142.8
Min nTPM: 103.4
Sample A Female 103.4
Sample B Female 142.8
Sample C Male 142.8
Sample D Male 128.9

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