MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:87.3 nTPM
GTEx:11.6 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:71.3 nTPM
Mouse:25.1 nTPM
Allen mouse:15.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 87.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.3
2586 Male, age 75, left hemisphere 101.6
1830 Male, age 51, unknown 91.7
1833 Male, age 53, unknown 90.8
2411 Female, age 72, unknown 84.6
2666 Male, age 74, left hemisphere 82.8
1870 Female, age 42, unknown 80.6
2828 Female, age 72, unknown 71.2
2019 Male, age 18, unknown 69.0
1827 Male, age 72, unknown 67.7
2219 Male, age 76, both hemispheres 63.4
Dorsal raphe nucleus
nTPM: 67.1
2750 Male, age 76, both hemispheres 82.8
2047 Male, age 72, unknown 69.3
2016 Female, age 72, unknown 63.6
1828 Male, age 53, unknown 62.9
2298 Female, age 72, unknown 57.1
Inferior colliculus
nTPM: 69.5
2849 Male, age 72, unknown 87.1
1848 Female, age 42, unknown 68.3
2097 Female, age 72, unknown 61.5
1890 Male, age 53, unknown 61.0
Median raphe nucleus
nTPM: 64.8
2220 Male, age 76, midline 64.8
Periaquaductal grey, anterior
nTPM: 83.2
2502 Female, age 75, unknown 95.5
1947 Male, age 18, unknown 81.5
1795 Male, age 51, unknown 72.6
Periaquaductal grey, dorsal
nTPM: 57.3
2464 Female, age 72, unknown 71.0
1840 Male, age 53, unknown 62.1
1831 Male, age 72, unknown 49.9
2850 Male, age 76, both hemispheres 46.0
Periaquaductal grey, lateral
nTPM: 62.5
2272 Male, age 74, both hemispheres 70.0
2053 Male, age 18, unknown 66.4
2140 Male, age 76, both hemispheres 51.1
Pretectal area
nTPM: 64.1
2407 Male, age 75, both hemispheres 94.5
2825 Male, age 18, unknown 82.3
2316 Male, age 76, right hemisphere 71.0
1815 Male, age 53, unknown 65.1
2007 Male, age 72, unknown 63.4
2667 Female, age 75, unknown 62.8
2224 Female, age 72, unknown 62.6
1817 Female, age 42, unknown 57.9
2273 Male, age 74, both hemispheres 53.9
1816 Male, age 51, unknown 51.0
1944 Female, age 72, unknown 40.7
Red nucleus
nTPM: 87.3
2584 Male, age 75, left hemisphere 103.7
2588 Male, age 74, left hemisphere 98.3
2769 Male, age 72, unknown 97.4
2227 Male, age 72, unknown 95.6
1904 Male, age 53, unknown 95.1
2823 Male, age 76, right hemisphere 86.5
1865 Male, age 51, unknown 85.6
1821 Female, age 72, unknown 83.1
2785 Male, age 18, unknown 82.7
2503 Female, age 72, unknown 82.2
1954 Female, age 42, unknown 71.2
2725 Female, age 75, unknown 65.7
Substantia nigra
nTPM: 75.2
2583 Male, age 75, right hemisphere 97.4
2665 Male, age 74, both hemispheres 84.9
1851 Male, age 51, unknown 80.8
2590 Female, age 75, unknown 80.7
2699 Male, age 18, unknown 75.1
1941 Male, age 53, unknown 72.4
1916 Female, age 42, unknown 69.6
2409 Female, age 72, unknown 66.3
2241 Male, age 72, unknown 64.7
1889 Female, age 72, unknown 60.3
Superior colliculus
nTPM: 73.8
2664 Male, age 75, both hemispheres 94.8
1839 Male, age 51, unknown 86.5
2587 Male, age 74, left hemisphere 81.8
2668 Female, age 75, unknown 76.3
1895 Male, age 76, right hemisphere 75.8
1913 Female, age 42, unknown 73.4
1796 Male, age 53, unknown 72.9
1995 Male, age 72, unknown 67.0
2261 Male, age 18, unknown 62.7
2087 Female, age 72, unknown 47.1
Ventral tegmental area
nTPM: 78.0
2223 Female, age 72, unknown 119.2
2410 Female, age 72, unknown 78.5
1942 Male, age 51, unknown 72.3
1915 Female, age 42, unknown 69.0
2021 Male, age 53, unknown 65.0
2218 Male, age 76, both hemispheres 64.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 183

Max nTPM: 35.6
Min nTPM: 1.7
Std nTPM: 4.9
Median nTPM: 11.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 35.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 28.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 25.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 24.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 22.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 22.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 20.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 20.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 19.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.6
FF:10158-103A5 76 years, female 93.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.0
Samples: 4

Max nTPM: 104.1
Min nTPM: 41.4
Sample A Female 61.7
Sample B Female 41.4
Sample C Male 60.7
Sample D Male 104.1
Midbrain
nTPM: 71.3
Samples: 4

Max nTPM: 117.4
Min nTPM: 45.3
Sample A Female 117.4
Sample B Female 60.7
Sample C Male 45.3
Sample D Male 61.8
Periaqueductal gray
nTPM: 47.6
Samples: 3

Max nTPM: 51.5
Min nTPM: 39.9
Sample B Female 51.5
Sample C Male 39.9
Sample D Male 51.3
Superior colliculi
nTPM: 55.6
Samples: 4

Max nTPM: 74.7
Min nTPM: 27.3
Sample A Female 65.0
Sample B Female 27.3
Sample C Male 55.5
Sample D Male 74.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 27.0
Min nTPM: 22.8
Sample A Male 24.6
Sample B Male 22.8
Sample C Female 25.9
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.0
69236658 Antisense, RP_050329_04_B05, Mouse strain C57BL/6J (56 days, male) 15.0

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