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  • NDUFB7
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:328.5 nTPM
HPA Brain:157.9 nTPM
GTEx:328.5 nTPM
FANTOM5:88.8 Scaled Tags Per Million
Pig:82.0 nTPM
Mouse:237.6 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.9
Sample id Sample description nTPM
Amygdala
nTPM: 157.9
2814 Male, age 76, right hemisphere 177.7
2514 Male, age 75, right hemisphere 157.4
2517 Female, age 94, left hemisphere 157.4
2695 Female, age 67, right hemisphere 151.4
1987 Female, age 91, left hemisphere 145.7
Basal amygdala
nTPM: 142.2
2609 Male, age 75, right hemisphere 156.7
2243 Female, age 91, right hemisphere 149.6
2685 Female, age 94, left hemisphere 149.6
1955 Male, age 76, both hemispheres 139.7
2110 Male, age 80, left hemisphere 139.3
2827 Female, age 67, right hemisphere 118.2
Central amygdala
nTPM: 152.3
2826 Female, age 94, left hemisphere 178.1
1905 Male, age 76, both hemispheres 174.1
2515 Male, age 75, right hemisphere 153.5
2239 Male, age 80, left hemisphere 146.5
2701 Female, age 91, right hemisphere 109.4
Corticomedial amygdala
nTPM: 135.1
2428 Male, age 75, right hemisphere 149.7
2829 Male, age 80, left hemisphere 144.2
2242 Female, age 91, right hemisphere 138.1
2240 Male, age 76, both hemispheres 130.5
2429 Female, age 94, left hemisphere 127.9
2535 Female, age 67, right hemisphere 120.2
Lateral amygdala
nTPM: 145.9
2516 Male, age 75, right hemisphere 172.7
2534 Female, age 94, left hemisphere 172.1
1883 Male, age 76, both hemispheres 158.6
2255 Female, age 91, right hemisphere 135.8
2830 Female, age 67, right hemisphere 118.3
2256 Male, age 80, left hemisphere 117.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

328.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 328.5
Samples: 181

Max nTPM: 956.3
Min nTPM: 146.2
Std nTPM: 119.5
Median nTPM: 311.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 956.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 927.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 857.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 748.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 663.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 613.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 577.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 530.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 525.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 518.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 489.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 479.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 466.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 462.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 462.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 458.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 440.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 436.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 432.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 428.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 428.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 427.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 422.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 419.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 419.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 417.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 413.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 413.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 409.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 408.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 407.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 403.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 401.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 400.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 399.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 391.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 391.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 383.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 381.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 380.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 380.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 377.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 376.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 375.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 372.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 369.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 367.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 365.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 364.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 361.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 360.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 360.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 358.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 358.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 357.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 355.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 352.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 347.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 347.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 344.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 343.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 343.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 342.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 338.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 336.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 335.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 333.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 333.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 330.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 329.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 329.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 329.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 328.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 326.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 324.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 324.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 321.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 321.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 320.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 320.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 319.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 319.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 318.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 316.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 316.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 315.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 314.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 314.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 313.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 313.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 311.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 308.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 307.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 306.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 303.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 302.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 301.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 298.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 296.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 294.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 294.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 293.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 293.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 291.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 289.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 289.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 288.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 286.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 286.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 285.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 284.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 283.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 282.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 282.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 281.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 281.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 281.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 280.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 279.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 277.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 276.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 274.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 274.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 272.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 271.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 270.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 270.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 270.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 268.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 266.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 264.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 262.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 262.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 260.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 257.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 257.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 255.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 253.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 252.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 252.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 252.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 248.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 248.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 247.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 246.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 246.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 243.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 243.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 241.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 240.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 239.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 236.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 235.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 233.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 232.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 231.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 230.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 229.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 226.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 224.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 218.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 218.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 215.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 210.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 209.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 209.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 207.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 207.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 202.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 202.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 199.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 194.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 191.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 189.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 179.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 175.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 160.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 159.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 155.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 146.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 88.8
FF:10151-102I7 76 years, female 88.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.0
Pig sample Sample description nTPM
Amygdala
nTPM: 82.0
Samples: 4

Max nTPM: 115.2
Min nTPM: 49.1
Sample A Female 115.2
Sample B Female 86.5
Sample C Male 77.2
Sample D Male 49.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 237.6
Samples: 4

Max nTPM: 253.8
Min nTPM: 226.5
Sample A Male 237.6
Sample B Male 226.5
Sample C Female 253.8
Sample D Female 232.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.3
68545312 Antisense, RP_050118_03_C01, Mouse strain C57BL/6J (56 days, male) 14.3

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