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NDUFB7
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • NDUFB7
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:256.0 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:124.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002817
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

256.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 256.0
Samples: 300

Max nTPM: 606.1
Min nTPM: 103.0
Std nTPM: 75.4
Median nTPM: 243.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 606.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 568.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 566.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 499.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 489.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 484.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 481.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 481.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 450.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 434.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 431.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 421.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 415.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 406.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 402.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 401.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 390.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 384.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 378.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 376.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 373.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 371.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 369.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 365.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 364.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 361.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 353.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 353.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 348.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 347.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 343.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 340.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 338.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 332.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 331.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 331.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 331.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 328.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 326.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 326.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 324.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 324.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 324.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 321.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 319.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 317.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 316.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 314.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 314.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 309.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 307.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 305.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 305.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 305.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 303.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 301.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 300.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 300.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 300.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 299.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 298.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 297.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 297.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 296.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 294.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 294.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 294.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 293.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 293.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 291.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 290.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 290.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 288.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 288.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 287.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 287.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 286.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 285.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 284.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 284.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 284.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 283.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 282.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 282.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 282.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 281.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 281.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 281.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 280.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 280.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 280.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 279.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 279.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 279.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 276.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 275.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 273.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 273.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 272.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 271.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 271.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 271.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 269.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 269.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 267.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 267.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 266.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 266.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 265.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 265.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 264.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 264.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 263.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 263.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 263.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 263.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 262.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 262.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 261.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 261.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 260.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 259.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 259.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 259.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 258.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 257.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 257.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 257.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 255.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 255.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 255.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 254.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 252.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 252.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 250.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 250.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 249.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 249.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 248.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 248.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 248.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 248.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 247.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 247.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 246.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 245.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 245.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 245.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 244.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 243.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 242.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 242.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 242.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 242.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 241.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 241.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 241.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 240.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 240.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 239.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 239.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 238.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 237.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 237.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 237.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 235.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 235.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 235.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 234.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 234.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 233.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 232.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 232.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 232.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 231.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 230.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 230.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 229.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 228.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 227.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 227.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 227.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 226.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 225.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 225.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 224.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 224.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 224.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 224.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 223.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 223.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 223.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 223.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 221.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 221.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 220.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 220.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 219.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 219.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 218.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 218.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 217.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 216.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 215.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 215.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 215.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 215.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 214.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 214.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 214.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 213.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 213.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 212.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 212.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 211.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 210.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 209.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 209.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 208.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 208.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 207.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 207.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 207.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 206.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 206.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 206.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 205.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 205.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 204.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 204.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 204.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 203.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 203.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 203.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 202.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 202.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 202.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 202.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 201.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 201.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 200.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 200.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 199.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 199.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 199.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 198.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 198.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 198.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 197.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 196.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 196.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 195.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 194.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 193.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 193.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 192.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 192.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 191.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 191.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 188.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 187.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 186.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 186.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 186.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 186.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 185.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 181.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 180.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 179.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 178.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 178.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 176.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 176.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 174.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 174.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 173.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 172.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 172.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 171.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 170.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 170.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 167.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 165.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 163.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 162.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 156.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 155.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 152.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 151.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 147.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 147.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 147.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 146.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 137.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 133.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 133.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 125.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 117.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 116.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 103.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 95.3
FF:10164-103B2 76 years, female 95.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.7
Pig sample Sample description nTPM
Caudate
nTPM: 124.7
Samples: 4

Max nTPM: 143.9
Min nTPM: 105.6
Sample A Female 108.3
Sample B Female 143.9
Sample C Male 140.9
Sample D Male 105.6

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