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  • SUMMARY

  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:195.6 nTPM
FANTOM5:159.5 Scaled Tags Per Million
Pig:122.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041713Antibody HPA049578
Glial cells LowNot detected
Neuronal cells MediumNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 195.6
Samples: 300

Max nTPM: 472.4
Min nTPM: 43.7
Std nTPM: 58.1
Median nTPM: 188.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 472.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 423.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 357.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 352.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 351.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 340.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 339.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 333.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 316.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 314.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 309.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 309.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 308.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 303.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 302.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 300.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 299.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 298.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 291.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 290.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 289.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 285.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 282.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 275.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 273.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 272.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 272.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 271.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 268.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 267.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 265.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 264.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 263.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 263.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 263.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 262.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 262.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 260.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 260.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 260.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 259.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 257.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 257.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 256.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 255.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 253.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 253.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 251.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 249.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 247.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 243.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 242.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 240.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 240.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 239.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 237.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 237.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 237.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 235.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 235.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 235.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 234.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 233.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 232.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 232.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 232.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 230.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 228.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 225.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 225.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 225.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 224.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 223.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 222.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 222.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 221.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 220.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 219.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 219.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 219.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 219.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 219.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 219.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 219.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 218.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 218.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 218.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 218.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 218.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 217.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 216.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 216.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 216.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 216.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 216.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 215.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 213.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 213.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 213.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 213.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 212.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 212.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 211.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 211.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 210.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 209.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 209.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 208.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 207.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 207.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 206.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 206.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 206.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 206.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 205.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 205.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 204.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 204.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 203.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 203.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 202.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 202.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 202.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 201.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 201.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 201.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 201.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 200.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 200.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 199.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 199.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 199.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 198.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 198.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 198.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 197.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 197.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 196.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 196.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 195.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 195.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 194.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 194.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 194.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 194.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 193.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 192.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 190.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 190.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 188.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 187.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 187.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 187.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 187.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 186.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 185.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 185.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 185.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 184.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 184.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 184.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 182.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 182.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 182.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 182.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 181.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 180.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 179.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 179.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 179.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 178.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 178.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 178.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 176.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 176.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 176.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 176.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 175.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 175.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 175.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 175.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 175.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 175.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 175.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 174.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 174.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 174.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 174.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 173.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 173.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 172.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 172.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 172.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 171.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 171.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 171.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 169.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 169.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 168.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 168.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 167.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 167.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 167.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 167.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 166.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 166.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 166.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 166.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 166.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 165.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 164.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 164.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 164.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 163.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 163.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 163.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 163.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 162.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 161.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 161.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 160.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 160.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 160.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 159.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 159.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 159.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 159.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 159.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 157.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 157.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 156.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 156.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 155.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 155.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 155.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 155.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 154.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 154.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 153.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 153.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 153.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 152.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 150.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 150.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 150.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 149.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 149.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 148.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 147.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 147.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 147.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 146.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 146.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 146.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 145.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 145.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 144.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 144.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 143.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 142.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 141.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 141.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 140.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 139.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 138.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 138.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 137.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 136.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 136.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 135.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 134.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 133.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 130.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 130.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 130.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 128.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 127.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 125.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 122.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 120.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 119.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 117.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 114.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 112.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 112.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 107.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 104.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 103.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 100.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 100.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 99.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 95.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 87.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 76.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 75.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 70.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 54.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 51.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 43.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 159.5
FF:10164-103B2 76 years, female 159.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.6
Pig sample Sample description nTPM
Caudate
nTPM: 122.6
Samples: 4

Max nTPM: 161.6
Min nTPM: 91.2
Sample A Female 91.2
Sample B Female 124.2
Sample C Male 161.6
Sample D Male 113.2

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