MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.4 nTPM
HPA Brain:48.5 nTPM
GTEx:33.4 nTPM
Pig:7.2 nTPM
Mouse:0.7 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2586 Male, age 75, left hemisphere 53.7
2666 Male, age 74, left hemisphere 51.3
1830 Male, age 51, unknown 43.2
2019 Male, age 18, unknown 39.0
1870 Female, age 42, unknown 37.4
1833 Male, age 53, unknown 35.8
2828 Female, age 72, unknown 35.3
1827 Male, age 72, unknown 32.3
2411 Female, age 72, unknown 30.5
2219 Male, age 76, both hemispheres 23.4
Dorsal raphe nucleus
nTPM: 38.0
2750 Male, age 76, both hemispheres 52.4
2047 Male, age 72, unknown 42.4
1828 Male, age 53, unknown 34.4
2298 Female, age 72, unknown 30.9
2016 Female, age 72, unknown 30.0
Inferior colliculus
nTPM: 29.0
2849 Male, age 72, unknown 30.2
1890 Male, age 53, unknown 29.4
1848 Female, age 42, unknown 28.5
2097 Female, age 72, unknown 27.8
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Periaquaductal grey, anterior
nTPM: 37.4
1795 Male, age 51, unknown 41.6
2502 Female, age 75, unknown 35.5
1947 Male, age 18, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 32.5
2850 Male, age 76, both hemispheres 41.8
1831 Male, age 72, unknown 34.9
2464 Female, age 72, unknown 28.5
1840 Male, age 53, unknown 24.7
Periaquaductal grey, lateral
nTPM: 40.2
2140 Male, age 76, both hemispheres 47.3
2053 Male, age 18, unknown 39.9
2272 Male, age 74, both hemispheres 33.3
Pretectal area
nTPM: 29.9
2316 Male, age 76, right hemisphere 44.4
1817 Female, age 42, unknown 40.1
2224 Female, age 72, unknown 37.2
2825 Male, age 18, unknown 33.2
2007 Male, age 72, unknown 29.8
1815 Male, age 53, unknown 27.7
2667 Female, age 75, unknown 27.7
1944 Female, age 72, unknown 25.0
2407 Male, age 75, both hemispheres 24.6
1816 Male, age 51, unknown 21.6
2273 Male, age 74, both hemispheres 17.4
Red nucleus
nTPM: 39.8
2588 Male, age 74, left hemisphere 48.9
2823 Male, age 76, right hemisphere 46.8
2227 Male, age 72, unknown 44.8
1904 Male, age 53, unknown 42.0
2769 Male, age 72, unknown 40.8
1821 Female, age 72, unknown 40.4
1954 Female, age 42, unknown 39.4
2785 Male, age 18, unknown 39.3
2725 Female, age 75, unknown 39.0
2584 Male, age 75, left hemisphere 35.2
1865 Male, age 51, unknown 34.6
2503 Female, age 72, unknown 26.1
Substantia nigra
nTPM: 37.1
2665 Male, age 74, both hemispheres 51.3
2699 Male, age 18, unknown 45.7
1851 Male, age 51, unknown 43.7
1941 Male, age 53, unknown 38.9
2409 Female, age 72, unknown 34.4
1889 Female, age 72, unknown 32.4
2583 Male, age 75, right hemisphere 31.6
1916 Female, age 42, unknown 31.5
2590 Female, age 75, unknown 31.4
2241 Male, age 72, unknown 29.8
Superior colliculus
nTPM: 28.1
2668 Female, age 75, unknown 35.6
2087 Female, age 72, unknown 35.0
1839 Male, age 51, unknown 30.6
2587 Male, age 74, left hemisphere 28.6
1796 Male, age 53, unknown 27.9
1895 Male, age 76, right hemisphere 27.6
2664 Male, age 75, both hemispheres 26.2
1913 Female, age 42, unknown 25.8
1995 Male, age 72, unknown 24.6
2261 Male, age 18, unknown 19.5
Ventral tegmental area
nTPM: 44.5
2218 Male, age 76, both hemispheres 61.0
2021 Male, age 53, unknown 56.0
2223 Female, age 72, unknown 45.5
1942 Male, age 51, unknown 38.3
1915 Female, age 42, unknown 37.4
2410 Female, age 72, unknown 29.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 183

Max nTPM: 138.6
Min nTPM: 3.4
Std nTPM: 20.6
Median nTPM: 28.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 138.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 125.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 109.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 96.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 96.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 90.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 86.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 81.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 78.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 76.6
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 67.8
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 4.6
Sample A Female 6.7
Sample B Female 10.8
Sample C Male 4.6
Sample D Male 6.5
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 8.1
Min nTPM: 4.0
Sample A Female 8.1
Sample B Female 5.3
Sample C Male 4.9
Sample D Male 4.0
Periaqueductal gray
nTPM: 5.3
Samples: 3

Max nTPM: 5.9
Min nTPM: 4.7
Sample B Female 5.9
Sample C Male 5.3
Sample D Male 4.7
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.7
Sample A Female 7.6
Sample B Female 8.4
Sample C Male 5.9
Sample D Male 5.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.3
Sample A Male 1.0
Sample B Male 0.3
Sample C Female 0.9
Sample D Female 0.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69672874 Antisense, RP_050428_04_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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