MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.3 nTPM
HPA Brain:17.6 nTPM
GTEx:41.3 nTPM
FANTOM5:37.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.2
2586 Male, age 75, left hemisphere 19.3
2828 Female, age 72, unknown 16.8
1870 Female, age 42, unknown 13.9
1827 Male, age 72, unknown 12.4
2666 Male, age 74, left hemisphere 11.5
2019 Male, age 18, unknown 11.1
1833 Male, age 53, unknown 10.4
1830 Male, age 51, unknown 9.8
2411 Female, age 72, unknown 9.0
2219 Male, age 76, both hemispheres 7.4
Dorsal raphe nucleus
nTPM: 13.0
2298 Female, age 72, unknown 14.9
2016 Female, age 72, unknown 13.2
2047 Male, age 72, unknown 12.9
2750 Male, age 76, both hemispheres 12.9
1828 Male, age 53, unknown 11.2
Inferior colliculus
nTPM: 10.3
2849 Male, age 72, unknown 12.7
1848 Female, age 42, unknown 12.0
1890 Male, age 53, unknown 9.5
2097 Female, age 72, unknown 7.0
Median raphe nucleus
nTPM: 9.2
2220 Male, age 76, midline 9.2
Periaquaductal grey, anterior
nTPM: 16.9
1795 Male, age 51, unknown 21.7
1947 Male, age 18, unknown 15.0
2502 Female, age 75, unknown 14.1
Periaquaductal grey, dorsal
nTPM: 16.3
2850 Male, age 76, both hemispheres 19.9
1840 Male, age 53, unknown 15.6
1831 Male, age 72, unknown 15.4
2464 Female, age 72, unknown 14.3
Periaquaductal grey, lateral
nTPM: 17.6
2140 Male, age 76, both hemispheres 22.4
2053 Male, age 18, unknown 17.3
2272 Male, age 74, both hemispheres 13.1
Pretectal area
nTPM: 16.8
2667 Female, age 75, unknown 24.0
2316 Male, age 76, right hemisphere 20.0
2273 Male, age 74, both hemispheres 19.9
1944 Female, age 72, unknown 17.4
1815 Male, age 53, unknown 16.5
2407 Male, age 75, both hemispheres 16.4
2825 Male, age 18, unknown 15.8
1816 Male, age 51, unknown 15.0
2007 Male, age 72, unknown 14.5
2224 Female, age 72, unknown 13.7
1817 Female, age 42, unknown 12.0
Red nucleus
nTPM: 13.2
2823 Male, age 76, right hemisphere 15.9
2227 Male, age 72, unknown 15.2
1954 Female, age 42, unknown 15.1
2588 Male, age 74, left hemisphere 14.7
2725 Female, age 75, unknown 14.6
2769 Male, age 72, unknown 14.0
2503 Female, age 72, unknown 13.6
1865 Male, age 51, unknown 12.7
1904 Male, age 53, unknown 12.5
2785 Male, age 18, unknown 12.1
1821 Female, age 72, unknown 10.0
2584 Male, age 75, left hemisphere 8.5
Substantia nigra
nTPM: 12.4
2583 Male, age 75, right hemisphere 15.0
2665 Male, age 74, both hemispheres 15.0
2699 Male, age 18, unknown 14.8
1916 Female, age 42, unknown 14.5
1851 Male, age 51, unknown 13.5
2590 Female, age 75, unknown 11.1
2409 Female, age 72, unknown 11.0
1941 Male, age 53, unknown 10.4
1889 Female, age 72, unknown 9.9
2241 Male, age 72, unknown 8.7
Superior colliculus
nTPM: 14.6
2664 Male, age 75, both hemispheres 20.7
1796 Male, age 53, unknown 19.3
2261 Male, age 18, unknown 15.6
2087 Female, age 72, unknown 15.4
1995 Male, age 72, unknown 14.5
1913 Female, age 42, unknown 12.8
1895 Male, age 76, right hemisphere 12.3
1839 Male, age 51, unknown 12.2
2587 Male, age 74, left hemisphere 11.5
2668 Female, age 75, unknown 11.4
Ventral tegmental area
nTPM: 12.1
2021 Male, age 53, unknown 15.6
1942 Male, age 51, unknown 13.1
2410 Female, age 72, unknown 11.9
2218 Male, age 76, both hemispheres 11.5
1915 Female, age 42, unknown 11.4
2223 Female, age 72, unknown 9.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.3
Samples: 183

Max nTPM: 159.1
Min nTPM: 4.5
Std nTPM: 25.6
Median nTPM: 36.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 159.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 151.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 128.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 125.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 109.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 105.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 97.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 97.4
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 94.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 90.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 85.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

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