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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SNU13
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:133.7 nTPM
FANTOM5:131.7 Scaled Tags Per Million
Pig:0.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029199
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 133.7
Samples: 300

Max nTPM: 287.8
Min nTPM: 82.0
Std nTPM: 30.3
Median nTPM: 126.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 287.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 270.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 239.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 217.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 216.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 211.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 210.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 208.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 200.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 199.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 197.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 196.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 195.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 193.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 192.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 191.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 191.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 188.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 186.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 186.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 185.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 184.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 184.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 182.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 181.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 180.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 178.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 177.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 177.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 174.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 174.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 173.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 173.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 173.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 172.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 171.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 171.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 169.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 168.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 165.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 164.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 164.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 163.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 160.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 160.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 159.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 158.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 158.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 158.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 158.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 157.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 156.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 156.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 156.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 156.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 156.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 155.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 155.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 155.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 155.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 154.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 153.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 152.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 152.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 152.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 152.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 151.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 151.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 151.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 151.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 150.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 150.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 149.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 149.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 147.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 146.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 146.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 146.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 146.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 146.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 146.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 146.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 144.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 144.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 144.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 144.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 144.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 144.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 143.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 143.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 143.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 143.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 142.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 142.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 141.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 140.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 139.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 139.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 139.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 139.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 139.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 138.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 138.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 138.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 138.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 138.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 138.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 137.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 137.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 137.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 136.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 136.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 136.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 135.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 135.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 135.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 135.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 134.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 134.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 134.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 134.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 134.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 133.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 133.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 133.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 133.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 132.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 132.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 131.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 131.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 131.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 131.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 131.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 131.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 130.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 130.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 130.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 130.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 129.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 129.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 129.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 129.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 129.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 128.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 128.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 127.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 127.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 127.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 126.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 126.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 126.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 126.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 126.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 126.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 125.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 125.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 125.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 125.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 125.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 125.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 125.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 125.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 125.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 125.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 124.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 124.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 124.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 124.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 124.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 124.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 123.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 123.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 123.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 122.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 122.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 122.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 122.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 122.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 121.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 121.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 121.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 120.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 120.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 120.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 119.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 119.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 119.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 119.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 119.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 119.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 119.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 119.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 118.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 118.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 118.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 118.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 118.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 118.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 118.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 118.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 117.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 117.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 116.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 116.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 116.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 116.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 116.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 116.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 115.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 115.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 115.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 115.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 114.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 114.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 114.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 114.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 114.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 114.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 114.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 114.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 114.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 114.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 113.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 113.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 113.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 112.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 112.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 112.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 112.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 112.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 111.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 111.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 111.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 111.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 111.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 111.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 111.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 111.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 110.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 110.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 109.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 109.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 109.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 109.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 109.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 109.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 108.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 108.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 108.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 108.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 108.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 107.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 107.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 107.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 106.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 106.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 105.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 104.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 103.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 102.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 102.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 102.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 102.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 101.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 101.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 101.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 101.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 100.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 100.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 100.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 99.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 99.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 99.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 99.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 98.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 97.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 97.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 97.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 96.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 96.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 95.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 95.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 94.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 94.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 93.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 93.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 92.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 91.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 91.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 90.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 88.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 87.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 85.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 84.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 82.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 131.7
FF:10164-103B2 76 years, female 131.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Caudate
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.0

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