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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.3
nTPM
Monaco:
14.9
nTPM
Schmiedel:
23.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.3
HPA sample
nTPM
Classical monocyte nTPM: 7.9
Samples: 6
Max nTPM: 9.6
Min nTPM: 5.8
P10809_1003
5.8
P10809_1020
6.9
P10809_1039
8.4
P10809_1058
7.4
P10809_1080
9.6
P10809_1107
9.0
Intermediate monocyte nTPM: 15.2
Samples: 6
Max nTPM: 22.6
Min nTPM: 9.8
P10809_1004
12.4
P10809_1023
16.6
P10809_1042
12.6
P10809_1061
22.6
P10809_1081
9.8
P10809_1108
17.4
Non-classical monocyte nTPM: 12.1
Samples: 5
Max nTPM: 18.8
Min nTPM: 0.1
P10809_1005
14.0
P10809_1053
18.8
P10809_1072
0.1
P10809_1082
10.1
P10809_1109
17.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.9
Monaco sample
nTPM
Classical monocyte nTPM: 7.3
Samples: 4
Max nTPM: 13.0
Min nTPM: 0.9
RHH5313_R3680
13.0
RHH5221_R3593
5.1
RHH5250_R3622
10.3
RHH5279_R3651
0.9
Intermediate monocyte nTPM: 14.9
Samples: 4
Max nTPM: 32.1
Min nTPM: 4.2
RHH5314_R3681
14.8
RHH5222_R3594
8.5
RHH5251_R3623
4.2
RHH5280_R3652
32.1
Non-classical monocyte nTPM: 7.7
Samples: 4
Max nTPM: 13.4
Min nTPM: 2.4
RHH5315_R3682
13.4
RHH5223_R3595
2.4
RHH5252_R3624
3.6
RHH5281_R3653
11.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
