We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CYB5R3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CYB5R3
TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:160.4 nTPM
HPA:111.0 nTPM
GTEx:160.4 nTPM
FANTOM5:284.8 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001566
Urothelial cells Low



URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.0
overview
Male, age 74
Urinary bladder sample 264
nTPM: 136.1
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 93.6
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 104.1
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 110

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.4
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 160.4
Samples: 77

Max nTPM: 288.5
Min nTPM: 97.4
Std nTPM: 35.5
Median nTPM: 157.9
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 288.5
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 240.0
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 239.1
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 236.0
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 225.9
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 219.2
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 208.8
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 205.5
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 202.7
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 202.4
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 196.8
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 193.0
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 191.5
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 191.3
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 184.3
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 181.4
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 180.3
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 179.7
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 176.9
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 176.0
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 175.9
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 175.3
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 174.6
GTEX-R45C-2426-SM-HL11G 60-69 years, female 174.3
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 171.6
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 171.3
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 171.2
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 170.0
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 168.1
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 165.1
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 164.0
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 163.8
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 162.8
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 162.8
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 162.7
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 162.4
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 159.5
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 158.2
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 157.9
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 156.7
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 155.2
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 155.1
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 154.9
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 152.9
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 152.9
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 152.5
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 149.4
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 149.2
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 147.5
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 147.2
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 143.7
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 142.8
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 141.0
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 140.5
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 139.3
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 138.3
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 137.7
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 137.3
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 136.2
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 134.0
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 130.5
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 129.9
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 129.9
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 129.1
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 126.3
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 124.4
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 123.6
GTEX-Q734-1226-SM-GRR21 40-49 years, female 122.4
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 118.4
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 113.4
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 113.3
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 110.8
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 109.3
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 106.9
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 106.3
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 102.1
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 97.4
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

284.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 284.8
FF:10011-101C2 55,58,79 years, mixed 284.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo