MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.8 nTPM
HPA Brain:151.1 nTPM
GTEx:83.8 nTPM
FANTOM5:2.5 Scaled Tags Per Million
Pig:280.9 nTPM
Mouse:92.4 nTPM
Allen mouse:10.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 151.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.0
2019 Male, age 18, unknown 242.2
2219 Male, age 76, both hemispheres 157.3
2666 Male, age 74, left hemisphere 148.5
2411 Female, age 72, unknown 79.5
1827 Male, age 72, unknown 68.4
1830 Male, age 51, unknown 66.6
2828 Female, age 72, unknown 63.3
1833 Male, age 53, unknown 58.5
1870 Female, age 42, unknown 57.3
2586 Male, age 75, left hemisphere 48.7
Dorsal raphe nucleus
nTPM: 151.1
1828 Male, age 53, unknown 290.7
2047 Male, age 72, unknown 234.5
2750 Male, age 76, both hemispheres 96.8
2298 Female, age 72, unknown 91.9
2016 Female, age 72, unknown 41.8
Inferior colliculus
nTPM: 87.4
1890 Male, age 53, unknown 109.4
1848 Female, age 42, unknown 101.5
2097 Female, age 72, unknown 82.4
2849 Male, age 72, unknown 56.4
Median raphe nucleus
nTPM: 114.1
2220 Male, age 76, midline 114.1
Periaquaductal grey, anterior
nTPM: 67.5
1947 Male, age 18, unknown 78.8
1795 Male, age 51, unknown 72.7
2502 Female, age 75, unknown 51.1
Periaquaductal grey, dorsal
nTPM: 38.7
2464 Female, age 72, unknown 50.6
2850 Male, age 76, both hemispheres 40.3
1831 Male, age 72, unknown 37.4
1840 Male, age 53, unknown 26.6
Periaquaductal grey, lateral
nTPM: 32.5
2272 Male, age 74, both hemispheres 52.0
2140 Male, age 76, both hemispheres 23.4
2053 Male, age 18, unknown 22.1
Pretectal area
nTPM: 99.7
1817 Female, age 42, unknown 234.2
2007 Male, age 72, unknown 199.6
1944 Female, age 72, unknown 172.1
2667 Female, age 75, unknown 109.9
1816 Male, age 51, unknown 109.6
1815 Male, age 53, unknown 90.2
2224 Female, age 72, unknown 44.2
2825 Male, age 18, unknown 40.7
2407 Male, age 75, both hemispheres 38.1
2273 Male, age 74, both hemispheres 32.1
2316 Male, age 76, right hemisphere 25.9
Red nucleus
nTPM: 144.8
1821 Female, age 72, unknown 203.5
1865 Male, age 51, unknown 187.8
2785 Male, age 18, unknown 182.5
1954 Female, age 42, unknown 178.0
2823 Male, age 76, right hemisphere 157.5
2503 Female, age 72, unknown 145.1
2227 Male, age 72, unknown 131.4
2588 Male, age 74, left hemisphere 131.1
2769 Male, age 72, unknown 129.2
2725 Female, age 75, unknown 116.0
1904 Male, age 53, unknown 103.0
2584 Male, age 75, left hemisphere 72.6
Substantia nigra
nTPM: 146.0
1941 Male, age 53, unknown 254.7
2665 Male, age 74, both hemispheres 230.5
1916 Female, age 42, unknown 228.4
1889 Female, age 72, unknown 177.8
1851 Male, age 51, unknown 156.2
2409 Female, age 72, unknown 131.9
2241 Male, age 72, unknown 94.4
2699 Male, age 18, unknown 91.6
2590 Female, age 75, unknown 48.4
2583 Male, age 75, right hemisphere 45.7
Superior colliculus
nTPM: 76.2
2668 Female, age 75, unknown 178.1
1895 Male, age 76, right hemisphere 157.3
2087 Female, age 72, unknown 110.5
1796 Male, age 53, unknown 55.6
1839 Male, age 51, unknown 55.5
2261 Male, age 18, unknown 49.6
1913 Female, age 42, unknown 45.8
2587 Male, age 74, left hemisphere 38.7
1995 Male, age 72, unknown 35.9
2664 Male, age 75, both hemispheres 34.8
Ventral tegmental area
nTPM: 116.4
2218 Male, age 76, both hemispheres 172.7
2410 Female, age 72, unknown 155.8
2223 Female, age 72, unknown 137.7
1915 Female, age 42, unknown 130.5
1942 Male, age 51, unknown 57.8
2021 Male, age 53, unknown 44.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 83.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.8
Samples: 183

Max nTPM: 1148.7
Min nTPM: 1.0
Std nTPM: 126.1
Median nTPM: 37.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1148.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 655.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 532.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 342.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 327.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 295.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 290.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 283.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 282.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 272.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 268.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 280.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 209.6
Samples: 4

Max nTPM: 515.3
Min nTPM: 73.3
Sample A Female 515.3
Sample B Female 73.3
Sample C Male 171.1
Sample D Male 78.7
Midbrain
nTPM: 152.2
Samples: 4

Max nTPM: 336.0
Min nTPM: 30.9
Sample A Female 30.9
Sample B Female 109.1
Sample C Male 336.0
Sample D Male 132.7
Periaqueductal gray
nTPM: 71.6
Samples: 3

Max nTPM: 85.1
Min nTPM: 47.2
Sample B Female 82.6
Sample C Male 85.1
Sample D Male 47.2
Superior colliculi
nTPM: 280.9
Samples: 4

Max nTPM: 603.1
Min nTPM: 82.7
Sample A Female 226.1
Sample B Female 82.7
Sample C Male 603.1
Sample D Male 211.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 92.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.5
Samples: 4

Max nTPM: 102.4
Min nTPM: 82.7
Sample A Male 82.7
Sample B Male 92.3
Sample C Female 102.4
Sample D Female 92.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
71920442 Antisense, RP_050915_01_H02, Mouse strain C57BL/6J (56 days, male) 10.7
74512048 Antisense, RP_060220_03_D07, Mouse strain C57BL/6J (56 days, male) 10.2

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