MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA Brain:47.4 nTPM
GTEx:27.5 nTPM
FANTOM5:103.7 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:141.5 nTPM
Allen mouse:7.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.4
2019 Male, age 18, unknown 56.2
2586 Male, age 75, left hemisphere 55.8
2828 Female, age 72, unknown 43.9
1870 Female, age 42, unknown 42.1
2666 Male, age 74, left hemisphere 42.0
1833 Male, age 53, unknown 41.7
1830 Male, age 51, unknown 40.7
2411 Female, age 72, unknown 40.1
1827 Male, age 72, unknown 38.0
2219 Male, age 76, both hemispheres 33.7
Dorsal raphe nucleus
nTPM: 38.0
1828 Male, age 53, unknown 41.7
2750 Male, age 76, both hemispheres 39.7
2047 Male, age 72, unknown 37.9
2016 Female, age 72, unknown 36.9
2298 Female, age 72, unknown 33.8
Inferior colliculus
nTPM: 43.4
1890 Male, age 53, unknown 46.7
1848 Female, age 42, unknown 44.1
2097 Female, age 72, unknown 43.7
2849 Male, age 72, unknown 39.2
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Periaquaductal grey, anterior
nTPM: 39.0
2502 Female, age 75, unknown 49.2
1947 Male, age 18, unknown 34.8
1795 Male, age 51, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 35.2
2464 Female, age 72, unknown 37.9
1840 Male, age 53, unknown 36.0
1831 Male, age 72, unknown 35.5
2850 Male, age 76, both hemispheres 31.5
Periaquaductal grey, lateral
nTPM: 32.3
2053 Male, age 18, unknown 34.7
2140 Male, age 76, both hemispheres 33.0
2272 Male, age 74, both hemispheres 29.2
Pretectal area
nTPM: 40.1
1817 Female, age 42, unknown 49.3
2007 Male, age 72, unknown 47.3
1816 Male, age 51, unknown 44.2
2667 Female, age 75, unknown 43.6
1944 Female, age 72, unknown 43.3
2407 Male, age 75, both hemispheres 40.8
1815 Male, age 53, unknown 39.9
2825 Male, age 18, unknown 35.9
2316 Male, age 76, right hemisphere 35.5
2224 Female, age 72, unknown 32.0
2273 Male, age 74, both hemispheres 29.6
Red nucleus
nTPM: 47.4
2588 Male, age 74, left hemisphere 50.6
1821 Female, age 72, unknown 49.9
2785 Male, age 18, unknown 49.6
1904 Male, age 53, unknown 49.1
1865 Male, age 51, unknown 48.7
1954 Female, age 42, unknown 48.4
2584 Male, age 75, left hemisphere 47.6
2769 Male, age 72, unknown 47.4
2227 Male, age 72, unknown 47.3
2503 Female, age 72, unknown 45.3
2823 Male, age 76, right hemisphere 45.1
2725 Female, age 75, unknown 40.3
Substantia nigra
nTPM: 40.4
1916 Female, age 42, unknown 45.5
1889 Female, age 72, unknown 44.3
1851 Male, age 51, unknown 43.7
2583 Male, age 75, right hemisphere 43.2
2241 Male, age 72, unknown 42.1
2665 Male, age 74, both hemispheres 39.0
2409 Female, age 72, unknown 38.7
1941 Male, age 53, unknown 38.4
2590 Female, age 75, unknown 34.5
2699 Male, age 18, unknown 34.4
Superior colliculus
nTPM: 40.6
2664 Male, age 75, both hemispheres 49.7
2087 Female, age 72, unknown 43.3
1839 Male, age 51, unknown 40.1
1995 Male, age 72, unknown 40.0
1913 Female, age 42, unknown 39.6
2668 Female, age 75, unknown 39.4
2261 Male, age 18, unknown 38.9
2587 Male, age 74, left hemisphere 38.6
1895 Male, age 76, right hemisphere 38.2
1796 Male, age 53, unknown 37.9
Ventral tegmental area
nTPM: 38.8
2410 Female, age 72, unknown 43.6
2223 Female, age 72, unknown 40.0
1915 Female, age 42, unknown 39.0
1942 Male, age 51, unknown 38.3
2218 Male, age 76, both hemispheres 36.9
2021 Male, age 53, unknown 35.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.5
Samples: 183

Max nTPM: 42.8
Min nTPM: 15.5
Std nTPM: 4.2
Median nTPM: 27.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 42.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 39.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 37.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 36.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 35.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 34.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 34.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.7
FF:10158-103A5 76 years, female 103.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 40.4
Min nTPM: 25.1
Sample A Female 35.7
Sample B Female 25.1
Sample C Male 31.0
Sample D Male 40.4
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 44.2
Min nTPM: 33.6
Sample A Female 44.2
Sample B Female 33.6
Sample C Male 37.8
Sample D Male 34.3
Periaqueductal gray
nTPM: 28.9
Samples: 3

Max nTPM: 31.4
Min nTPM: 27.5
Sample B Female 31.4
Sample C Male 27.5
Sample D Male 27.7
Superior colliculi
nTPM: 35.4
Samples: 4

Max nTPM: 41.7
Min nTPM: 22.1
Sample A Female 36.9
Sample B Female 22.1
Sample C Male 41.7
Sample D Male 40.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.5
Samples: 4

Max nTPM: 149.4
Min nTPM: 133.9
Sample A Male 135.7
Sample B Male 133.9
Sample C Female 149.4
Sample D Female 147.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
68862048 Antisense, RP_050301_01_D10, Mouse strain C57BL/6J (56 days, male) 7.8

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