HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:93.4 nTPM
HPA Brain:48.7 nTPM
GTEx:93.4 nTPM
FANTOM5:65.7 Scaled Tags Per Million
Pig:57.4 nTPM
Mouse:223.1 nTPM
Allen mouse:2.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000864Antibody CAB012232Antibody CAB012520
Glial cells MediumMediumNot detected
Neuronal cells HighHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 48.7
Sample id Sample description nTPM
Hippocampus
nTPM: 40.4
1898 Male, age 80, left hemisphere 51.4
1855 Male, age 76, left hemisphere 41.4
2529 Female, age 94, left hemisphere 40.9
2621 Female, age 67, right hemisphere 37.1
1911 Female, age 85, right hemisphere 36.5
2148 Female, age 91, left hemisphere 34.9
Dentate gyrus
nTPM: 40.3
1927 Female, age 91, both hemispheres 46.1
2010 Male, age 76, both hemispheres 44.1
2530 Female, age 94, left hemisphere 42.9
2246 Female, age 85, both hemispheres 39.9
2531 Female, age 67, both hemispheres 35.5
2528 Male, age 74, both hemispheres 33.1
Entorhinal gyrus
nTPM: 40.3
1938 Female, age 85, left hemisphere 47.6
2686 Male, age 75, right hemisphere 42.3
2764 Male, age 80, right hemisphere 40.8
2613 Female, age 94, left hemisphere 38.5
1787 Male, age 76, left hemisphere 38.3
2117 Female, age 91, right hemisphere 34.1
Hippocampus, CA1
nTPM: 43.2
2749 Male, age 80, left hemisphere 60.1
1873 Female, age 85, both hemispheres 48.9
2527 Male, age 74, both hemispheres 37.0
2045 Male, age 76, both hemispheres 35.8
2082 Female, age 91, right hemisphere 34.4
Hippocampus, CA2
nTPM: 43.1
1892 Male, age 76, both hemispheres 57.9
1963 Male, age 80, left hemisphere 52.2
2437 Female, age 94, left hemisphere 38.2
2113 Female, age 91, right hemisphere 37.0
2249 Male, age 74, both hemispheres 36.9
1940 Female, age 85, left hemisphere 36.6
Hippocampus, CA3
nTPM: 38.7
2137 Male, age 80, left hemisphere 52.0
1867 Male, age 76, both hemispheres 47.1
1891 Female, age 85, both hemispheres 40.0
2436 Male, age 74, both hemispheres 33.6
2861 Female, age 67, both hemispheres 31.5
2620 Female, age 94, left hemisphere 27.9
Parahippocampal cortex
nTPM: 43.5
1850 Male, age 80, both hemispheres 54.6
1933 Female, age 85, both hemispheres 49.0
1990 Female, age 91, right hemisphere 48.7
2532 Female, age 72, left hemisphere 46.0
2245 Female, age 91, both hemispheres 44.0
2018 Male, age 76, both hemispheres 42.6
2693 Female, age 94, both hemispheres 42.0
2250 Female, age 67, right hemisphere 40.6
2622 Female, age 67, right hemisphere 35.3
2692 Male, age 74, both hemispheres 32.6
Perirhinal gyrus
nTPM: 48.7
1841 Female, age 85, right hemisphere 57.0
1847 Female, age 91, left hemisphere 52.6
1794 Male, age 80, right hemisphere 47.3
2848 Male, age 76, right hemisphere 45.9
2521 Female, age 94, right hemisphere 41.0
Subiculum
nTPM: 39.9
1977 Female, age 85, both hemispheres 46.5
1901 Male, age 80, both hemispheres 45.8
2438 Female, age 94, left hemisphere 44.7
2042 Male, age 76, both hemispheres 36.9
2729 Female, age 91, right hemisphere 34.1
2619 Male, age 74, both hemispheres 31.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 93.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 93.4
Samples: 255

Max nTPM: 220.0
Min nTPM: 52.7
Std nTPM: 23.5
Median nTPM: 90.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 220.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 168.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 167.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 151.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 150.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 149.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 149.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 146.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 143.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 140.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 139.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 65.7
FF:10169-103B7 60 years, female 76.8
FF:10153-102I9 76 years, female 54.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 57.4
Pig sample Sample description nTPM
Subiculum
nTPM: 50.2
Samples: 4

Max nTPM: 64.5
Min nTPM: 44.7
Sample A Female 64.5
Sample B Female 44.7
Sample C Male 44.9
Sample D Male 46.8
Dorsal hippocampus
nTPM: 57.5
Samples: 4

Max nTPM: 76.0
Min nTPM: 41.9
Sample A Female 76.0
Sample B Female 51.7
Sample C Male 60.2
Sample D Male 41.9
Entorhinal cortex
nTPM: 52.4
Samples: 4

Max nTPM: 60.7
Min nTPM: 46.5
Sample A Female 55.5
Sample B Female 60.7
Sample C Male 46.9
Sample D Male 46.5
Ventral hippocampus
nTPM: 51.9
Samples: 4

Max nTPM: 64.2
Min nTPM: 40.6
Sample A Female 60.3
Sample B Female 40.6
Sample C Male 42.6
Sample D Male 64.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 223.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 223.1
Samples: 4

Max nTPM: 253.9
Min nTPM: 199.9
Sample A Male 217.9
Sample B Male 253.9
Sample C Female 220.6
Sample D Female 199.9
Hippocampal formation
nTPM: 207.4
Samples: 4

Max nTPM: 249.4
Min nTPM: 181.8
Sample A Male 249.4
Sample B Male 205.3
Sample C Female 181.8
Sample D Female 193.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
632493 Antisense, RP_040907_01_E01, Mouse strain C57BL/6J (56 days, male) 2.7

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