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  • PSMC6
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:42.2 nTPM
HPA Brain:32.3 nTPM
GTEx:42.2 nTPM
Pig:51.5 nTPM
Mouse:73.3 nTPM
Allen mouse:4.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.3
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 29.2
2226 Male, age 75, left hemisphere 36.7
1961 Female, age 42, unknown 21.8
Dorsomedial nucleus
nTPM: 22.0
2041 Female, age 72, unknown 23.8
1989 Male, age 62, unknown 22.6
2017 Female, age 42, unknown 19.7
Lateral hypothalamic area
nTPM: 32.3
2228 Male, age 66, unknown 40.8
2271 Male, age 75, both hemispheres 36.5
1791 Male, age 80, right hemisphere 32.6
2412 Male, age 62, unknown 19.4
Mammillary body
nTPM: 29.9
1923 Female, age 72, unknown 41.5
1948 Female, age 72, unknown 31.1
1945 Male, age 80, right hemisphere 27.8
2413 Male, age 66, unknown 26.1
1834 Female, age 42, unknown 23.2
Paraventricular nucleus
nTPM: 28.9
2700 Male, age 62, unknown 28.9
Preoptic area
nTPM: 25.9
1907 Male, age 80, right hemisphere 30.0
2414 Female, age 72, unknown 24.1
1861 Female, age 42, unknown 23.7
Supraoptic nucleus
nTPM: 30.4
1894 Female, age 72, unknown 37.4
2043 Male, age 62, unknown 27.2
2835 Female, age 72, unknown 26.6
Ventromedial nucleus
nTPM: 26.9
1982 Female, age 72, unknown 30.8
1822 Female, age 42, unknown 22.9

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.2
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 42.2
Samples: 257

Max nTPM: 76.2
Min nTPM: 24.6
Std nTPM: 7.4
Median nTPM: 41.7
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 76.2
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 65.9
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 64.6
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 63.1
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 63.0
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 58.2
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 57.9
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 57.5
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 56.9
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 55.7
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 55.5
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 55.1
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 54.8
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 54.7
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 54.7
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 54.6
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 54.5
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 54.2
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 53.9
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 53.4
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 53.3
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 53.1
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 53.0
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 52.7
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 52.1
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 52.0
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 51.9
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 51.5
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 50.4
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 50.2
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 49.9
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 49.7
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 49.7
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 49.7
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 49.6
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 49.4
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 49.3
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 49.3
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 49.3
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 49.2
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 49.1
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 49.0
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 49.0
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 49.0
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 48.9
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 48.9
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 48.8
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 48.7
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 48.6
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 48.5
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 48.4
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 48.0
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 47.8
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 47.7
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 47.6
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 47.2
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 47.0
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 47.0
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 46.8
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 46.7
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 46.7
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 46.5
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 46.5
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 46.2
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 46.0
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 46.0
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 46.0
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 45.9
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 45.8
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 45.8
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 45.7
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 45.6
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 45.4
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 45.4
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 45.4
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 45.3
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 45.2
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 45.2
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 45.1
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 45.0
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 45.0
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 45.0
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 44.7
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 44.7
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 44.7
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 44.6
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 44.6
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 44.6
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 44.5
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 44.5
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 44.2
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 43.9
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 43.9
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 43.9
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 43.9
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 43.8
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 43.8
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 43.8
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 43.7
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 43.7
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 43.7
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 43.7
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 43.6
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 43.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 43.6
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 43.5
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 43.2
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 43.0
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 42.9
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 42.9
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 42.9
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 42.8
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 42.8
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 42.8
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 42.7
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 42.7
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 42.7
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 42.7
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 42.5
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 42.5
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 42.3
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 42.3
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 42.3
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 42.2
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 42.1
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 41.9
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 41.8
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 41.7
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 41.7
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 41.7
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 41.5
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 41.5
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 41.5
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 41.4
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 41.3
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 41.2
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 41.2
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 41.1
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 41.0
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 40.8
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 40.7
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 40.6
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 40.6
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 40.5
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 40.5
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 40.4
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 40.2
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 40.2
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 40.2
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 40.2
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 40.1
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 39.8
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 39.8
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 39.8
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 39.7
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 39.7
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 39.7
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 39.6
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 39.4
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 39.4
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 39.3
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 39.3
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 39.1
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 39.0
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 39.0
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 39.0
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 38.8
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 38.7
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 38.7
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 38.7
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 38.7
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 38.6
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 38.3
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 38.2
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 38.2
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 38.1
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 38.0
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 38.0
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 37.9
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 37.9
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 37.8
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 37.8
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 37.7
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 37.7
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 37.6
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 37.5
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 37.5
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 37.5
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 37.4
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 37.2
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 37.2
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 37.1
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 36.9
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 36.7
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 36.6
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 36.5
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 36.4
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 36.3
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 36.2
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 36.1
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 36.1
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 36.1
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 36.0
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 35.9
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 35.9
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 35.8
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 35.6
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 35.6
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 35.5
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 35.4
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 35.3
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 35.2
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 35.0
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 34.7
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 34.7
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 34.7
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 34.7
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 34.5
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 34.4
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 34.2
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 34.1
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 34.1
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 33.9
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 33.8
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 33.8
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 33.7
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 33.7
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 33.6
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 33.6
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 33.6
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 33.2
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 33.2
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 33.1
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 32.9
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 32.6
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 32.5
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 32.5
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 32.3
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 32.2
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 32.2
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 32.2
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 32.1
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 32.0
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 31.8
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 31.6
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 31.5
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 31.3
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 31.3
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 31.0
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 30.9
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 30.5
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 30.2
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 30.1
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 29.5
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 28.6
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 25.6
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 24.6
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.5
Pig sample Sample description nTPM
Hypothalamus
nTPM: 51.5
Samples: 4

Max nTPM: 61.3
Min nTPM: 43.3
Sample A Female 61.3
Sample B Female 52.6
Sample C Male 48.9
Sample D Male 43.3

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.3
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 73.3
Samples: 4

Max nTPM: 77.9
Min nTPM: 68.7
Sample A Male 71.7
Sample B Male 75.0
Sample C Female 77.9
Sample D Female 68.7

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.2
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 4.2
81600150 Antisense, RP_080320_01_G07, Mouse strain C57BL/6J (56 days, male) 6.2
70919681 Antisense, RP_050713_01_H04, Mouse strain C57BL/6J (56 days, male) 3.3
69817420 Antisense, RP_050510_03_D02, Mouse strain C57BL/6J (56 days, male) 3.2
73512205 Antisense, RP_050713_01_H04, Mouse strain C57BL/6J (56 days, male) 0.9

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