HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:91.6 nTPM
HPA Brain:57.0 nTPM
GTEx:91.6 nTPM
FANTOM5:205.5 Scaled Tags Per Million
Pig:77.7 nTPM
Mouse:171.8 nTPM
Allen mouse:15.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000903Antibody CAB006244
Glial cells Not detectedMedium
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 57.0
Sample id Sample description nTPM
Hippocampus
nTPM: 56.6
2529 Female, age 94, left hemisphere 69.2
1898 Male, age 80, left hemisphere 60.9
2621 Female, age 67, right hemisphere 55.8
1855 Male, age 76, left hemisphere 54.1
1911 Female, age 85, right hemisphere 52.3
2148 Female, age 91, left hemisphere 47.5
Dentate gyrus
nTPM: 51.8
2010 Male, age 76, both hemispheres 62.8
2530 Female, age 94, left hemisphere 62.8
2246 Female, age 85, both hemispheres 54.7
1927 Female, age 91, both hemispheres 47.7
2531 Female, age 67, both hemispheres 46.4
2528 Male, age 74, both hemispheres 36.3
Entorhinal gyrus
nTPM: 50.9
1938 Female, age 85, left hemisphere 67.4
2117 Female, age 91, right hemisphere 58.7
2764 Male, age 80, right hemisphere 54.9
1787 Male, age 76, left hemisphere 49.4
2686 Male, age 75, right hemisphere 40.9
2613 Female, age 94, left hemisphere 34.2
Hippocampus, CA1
nTPM: 56.9
2749 Male, age 80, left hemisphere 72.9
2045 Male, age 76, both hemispheres 63.5
2527 Male, age 74, both hemispheres 54.9
1873 Female, age 85, both hemispheres 52.7
2082 Female, age 91, right hemisphere 40.3
Hippocampus, CA2
nTPM: 55.3
1892 Male, age 76, both hemispheres 75.1
2437 Female, age 94, left hemisphere 58.8
1963 Male, age 80, left hemisphere 54.1
2249 Male, age 74, both hemispheres 51.5
1940 Female, age 85, left hemisphere 50.9
2113 Female, age 91, right hemisphere 41.3
Hippocampus, CA3
nTPM: 52.1
1867 Male, age 76, both hemispheres 70.5
2137 Male, age 80, left hemisphere 56.1
2436 Male, age 74, both hemispheres 55.8
1891 Female, age 85, both hemispheres 52.5
2620 Female, age 94, left hemisphere 44.0
2861 Female, age 67, both hemispheres 33.8
Parahippocampal cortex
nTPM: 52.5
2245 Female, age 91, both hemispheres 66.8
2532 Female, age 72, left hemisphere 62.6
1933 Female, age 85, both hemispheres 59.6
1850 Male, age 80, both hemispheres 58.6
1990 Female, age 91, right hemisphere 58.5
2250 Female, age 67, right hemisphere 55.0
2018 Male, age 76, both hemispheres 49.9
2692 Male, age 74, both hemispheres 43.5
2693 Female, age 94, both hemispheres 37.4
2622 Female, age 67, right hemisphere 33.4
Perirhinal gyrus
nTPM: 57.0
1841 Female, age 85, right hemisphere 63.6
1847 Female, age 91, left hemisphere 63.0
2848 Male, age 76, right hemisphere 55.4
1794 Male, age 80, right hemisphere 53.2
2521 Female, age 94, right hemisphere 50.0
Subiculum
nTPM: 54.5
2438 Female, age 94, left hemisphere 63.7
1901 Male, age 80, both hemispheres 62.9
2042 Male, age 76, both hemispheres 60.0
1977 Female, age 85, both hemispheres 59.8
2619 Male, age 74, both hemispheres 47.1
2729 Female, age 91, right hemisphere 33.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 91.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 91.6
Samples: 255

Max nTPM: 478.9
Min nTPM: 41.0
Std nTPM: 41.7
Median nTPM: 85.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 478.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 330.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 308.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 250.1
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 235.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 197.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 192.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 166.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 162.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 151.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 145.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 205.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 205.5
FF:10153-102I9 76 years, female 206.4
FF:10169-103B7 60 years, female 204.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 77.7
Pig sample Sample description nTPM
Subiculum
nTPM: 63.2
Samples: 4

Max nTPM: 82.1
Min nTPM: 54.6
Sample A Female 82.1
Sample B Female 57.6
Sample C Male 54.6
Sample D Male 58.4
Dorsal hippocampus
nTPM: 77.7
Samples: 4

Max nTPM: 101.5
Min nTPM: 66.3
Sample A Female 101.5
Sample B Female 71.5
Sample C Male 71.5
Sample D Male 66.3
Entorhinal cortex
nTPM: 63.2
Samples: 4

Max nTPM: 70.0
Min nTPM: 56.0
Sample A Female 64.8
Sample B Female 70.0
Sample C Male 62.0
Sample D Male 56.0
Ventral hippocampus
nTPM: 66.7
Samples: 4

Max nTPM: 77.6
Min nTPM: 48.3
Sample A Female 68.0
Sample B Female 48.3
Sample C Male 72.8
Sample D Male 77.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 171.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 155.0
Samples: 4

Max nTPM: 162.6
Min nTPM: 147.8
Sample A Male 147.8
Sample B Male 158.1
Sample C Female 162.6
Sample D Female 151.5
Hippocampal formation
nTPM: 171.8
Samples: 4

Max nTPM: 174.2
Min nTPM: 167.7
Sample A Male 173.6
Sample B Male 167.7
Sample C Female 174.2
Sample D Female 171.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 15.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.5
68161466 Antisense, RP_041122_01_D07, Mouse strain C57BL/6J (56 days, male) 15.5

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