MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.4 nTPM
HPA Brain:48.7 nTPM
GTEx:59.4 nTPM
FANTOM5:62.3 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:32.7 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
1870 Female, age 42, unknown 43.1
2411 Female, age 72, unknown 43.0
1830 Male, age 51, unknown 41.0
2019 Male, age 18, unknown 38.6
1833 Male, age 53, unknown 37.7
2828 Female, age 72, unknown 36.8
2219 Male, age 76, both hemispheres 33.4
1827 Male, age 72, unknown 32.1
2666 Male, age 74, left hemisphere 25.8
2586 Male, age 75, left hemisphere 24.5
Dorsal raphe nucleus
nTPM: 43.6
2750 Male, age 76, both hemispheres 45.4
2298 Female, age 72, unknown 44.5
1828 Male, age 53, unknown 43.9
2047 Male, age 72, unknown 43.6
2016 Female, age 72, unknown 40.7
Inferior colliculus
nTPM: 40.1
2097 Female, age 72, unknown 46.0
1848 Female, age 42, unknown 42.3
1890 Male, age 53, unknown 38.3
2849 Male, age 72, unknown 33.9
Median raphe nucleus
nTPM: 46.7
2220 Male, age 76, midline 46.7
Periaquaductal grey, anterior
nTPM: 34.7
2502 Female, age 75, unknown 45.0
1947 Male, age 18, unknown 30.0
1795 Male, age 51, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 37.4
1831 Male, age 72, unknown 40.0
2850 Male, age 76, both hemispheres 39.8
2464 Female, age 72, unknown 35.3
1840 Male, age 53, unknown 34.5
Periaquaductal grey, lateral
nTPM: 41.2
2140 Male, age 76, both hemispheres 42.8
2272 Male, age 74, both hemispheres 40.8
2053 Male, age 18, unknown 40.1
Pretectal area
nTPM: 42.4
2667 Female, age 75, unknown 51.7
1944 Female, age 72, unknown 47.0
2273 Male, age 74, both hemispheres 46.5
2224 Female, age 72, unknown 44.1
2007 Male, age 72, unknown 41.9
2316 Male, age 76, right hemisphere 41.5
2825 Male, age 18, unknown 40.6
2407 Male, age 75, both hemispheres 40.1
1817 Female, age 42, unknown 39.2
1816 Male, age 51, unknown 37.5
1815 Male, age 53, unknown 36.5
Red nucleus
nTPM: 39.6
1821 Female, age 72, unknown 46.7
1865 Male, age 51, unknown 46.1
2769 Male, age 72, unknown 44.1
2503 Female, age 72, unknown 43.8
1954 Female, age 42, unknown 42.4
2227 Male, age 72, unknown 41.1
2823 Male, age 76, right hemisphere 38.9
1904 Male, age 53, unknown 38.3
2785 Male, age 18, unknown 35.9
2584 Male, age 75, left hemisphere 34.1
2725 Female, age 75, unknown 33.2
2588 Male, age 74, left hemisphere 30.8
Substantia nigra
nTPM: 48.7
1941 Male, age 53, unknown 67.2
2699 Male, age 18, unknown 55.2
2241 Male, age 72, unknown 53.6
1916 Female, age 42, unknown 51.9
2409 Female, age 72, unknown 51.7
1851 Male, age 51, unknown 46.7
1889 Female, age 72, unknown 45.6
2590 Female, age 75, unknown 41.3
2665 Male, age 74, both hemispheres 38.6
2583 Male, age 75, right hemisphere 35.3
Superior colliculus
nTPM: 38.2
2087 Female, age 72, unknown 42.9
1895 Male, age 76, right hemisphere 41.7
1913 Female, age 42, unknown 40.9
2587 Male, age 74, left hemisphere 40.2
2261 Male, age 18, unknown 39.8
1839 Male, age 51, unknown 39.5
2664 Male, age 75, both hemispheres 35.3
1995 Male, age 72, unknown 34.8
1796 Male, age 53, unknown 34.2
2668 Female, age 75, unknown 32.3
Ventral tegmental area
nTPM: 43.6
2410 Female, age 72, unknown 50.3
1915 Female, age 42, unknown 49.2
2021 Male, age 53, unknown 42.2
1942 Male, age 51, unknown 40.8
2218 Male, age 76, both hemispheres 39.4
2223 Female, age 72, unknown 39.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.4
Samples: 183

Max nTPM: 135.1
Min nTPM: 28.6
Std nTPM: 15.0
Median nTPM: 57.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 135.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 126.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 112.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 109.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 100.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 95.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 90.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 85.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 82.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 81.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 80.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.3
FF:10158-103A5 76 years, female 62.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 27.6
Min nTPM: 23.5
Sample A Female 27.6
Sample B Female 23.5
Sample C Male 26.4
Sample D Male 26.8
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 53.2
Min nTPM: 17.2
Sample A Female 53.2
Sample B Female 20.5
Sample C Male 20.4
Sample D Male 17.2
Periaqueductal gray
nTPM: 21.5
Samples: 3

Max nTPM: 22.8
Min nTPM: 20.5
Sample B Female 20.5
Sample C Male 21.1
Sample D Male 22.8
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 21.1
Min nTPM: 18.3
Sample A Female 19.3
Sample B Female 18.3
Sample C Male 21.1
Sample D Male 20.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 35.3
Min nTPM: 30.8
Sample A Male 35.3
Sample B Male 31.2
Sample C Female 30.8
Sample D Female 33.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
75081208 Antisense, RP_060412_01_A01, Mouse strain C57BL/6J (56 days, male) 1.3
638721 Antisense, RP_040831_02_D10, Mouse strain C57BL/6J (56 days, male) 0.2
Midbrain
Expression energy: 0.8
75081208 Antisense, RP_060412_01_A01, Mouse strain C57BL/6J (56 days, male) 1.3
638721 Antisense, RP_040831_02_D10, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo