MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.0 nTPM
HPA Brain:98.0 nTPM
GTEx:127.0 nTPM
FANTOM5:122.1 Scaled Tags Per Million
Pig:131.1 nTPM
Mouse:169.6 nTPM
Allen mouse:13.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 98.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.4
2411 Female, age 72, unknown 101.1
2019 Male, age 18, unknown 87.1
1827 Male, age 72, unknown 86.5
1870 Female, age 42, unknown 86.2
2828 Female, age 72, unknown 78.3
2219 Male, age 76, both hemispheres 77.6
1833 Male, age 53, unknown 76.1
2666 Male, age 74, left hemisphere 75.1
2586 Male, age 75, left hemisphere 74.0
1830 Male, age 51, unknown 72.0
Dorsal raphe nucleus
nTPM: 96.8
2298 Female, age 72, unknown 120.8
2047 Male, age 72, unknown 107.7
1828 Male, age 53, unknown 89.6
2750 Male, age 76, both hemispheres 89.5
2016 Female, age 72, unknown 76.4
Inferior colliculus
nTPM: 77.5
2097 Female, age 72, unknown 93.3
1890 Male, age 53, unknown 78.7
1848 Female, age 42, unknown 74.4
2849 Male, age 72, unknown 63.4
Median raphe nucleus
nTPM: 86.1
2220 Male, age 76, midline 86.1
Periaquaductal grey, anterior
nTPM: 86.7
1947 Male, age 18, unknown 96.8
2502 Female, age 75, unknown 86.2
1795 Male, age 51, unknown 77.2
Periaquaductal grey, dorsal
nTPM: 69.9
1840 Male, age 53, unknown 79.9
2464 Female, age 72, unknown 73.7
2850 Male, age 76, both hemispheres 63.7
1831 Male, age 72, unknown 62.4
Periaquaductal grey, lateral
nTPM: 72.5
2053 Male, age 18, unknown 76.3
2272 Male, age 74, both hemispheres 73.3
2140 Male, age 76, both hemispheres 67.8
Pretectal area
nTPM: 80.3
2224 Female, age 72, unknown 89.7
2007 Male, age 72, unknown 87.7
2667 Female, age 75, unknown 87.1
1817 Female, age 42, unknown 86.5
1816 Male, age 51, unknown 84.0
2273 Male, age 74, both hemispheres 81.6
1944 Female, age 72, unknown 77.8
1815 Male, age 53, unknown 77.1
2825 Male, age 18, unknown 75.8
2316 Male, age 76, right hemisphere 70.2
2407 Male, age 75, both hemispheres 65.3
Red nucleus
nTPM: 82.5
1821 Female, age 72, unknown 106.5
1865 Male, age 51, unknown 88.6
1904 Male, age 53, unknown 84.9
2227 Male, age 72, unknown 84.1
1954 Female, age 42, unknown 83.8
2503 Female, age 72, unknown 82.3
2769 Male, age 72, unknown 81.4
2588 Male, age 74, left hemisphere 78.0
2725 Female, age 75, unknown 77.9
2785 Male, age 18, unknown 77.9
2823 Male, age 76, right hemisphere 74.3
2584 Male, age 75, left hemisphere 70.0
Substantia nigra
nTPM: 98.0
1916 Female, age 42, unknown 130.4
1851 Male, age 51, unknown 122.0
2241 Male, age 72, unknown 113.0
2409 Female, age 72, unknown 101.1
1941 Male, age 53, unknown 94.9
1889 Female, age 72, unknown 89.4
2590 Female, age 75, unknown 88.2
2665 Male, age 74, both hemispheres 84.0
2699 Male, age 18, unknown 81.9
2583 Male, age 75, right hemisphere 74.8
Superior colliculus
nTPM: 75.7
2587 Male, age 74, left hemisphere 87.7
1796 Male, age 53, unknown 83.4
2668 Female, age 75, unknown 80.0
1895 Male, age 76, right hemisphere 79.0
2261 Male, age 18, unknown 77.7
2087 Female, age 72, unknown 72.4
2664 Male, age 75, both hemispheres 71.4
1839 Male, age 51, unknown 71.0
1913 Female, age 42, unknown 69.8
1995 Male, age 72, unknown 64.6
Ventral tegmental area
nTPM: 91.6
1915 Female, age 42, unknown 105.5
2410 Female, age 72, unknown 104.7
2223 Female, age 72, unknown 90.1
1942 Male, age 51, unknown 84.7
2218 Male, age 76, both hemispheres 83.8
2021 Male, age 53, unknown 80.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 127.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.0
Samples: 183

Max nTPM: 212.2
Min nTPM: 73.4
Std nTPM: 26.2
Median nTPM: 122.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 212.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 210.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 205.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 198.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 194.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 193.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 186.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 184.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 182.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 181.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 181.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 122.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.1
FF:10158-103A5 76 years, female 122.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 131.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 120.3
Samples: 4

Max nTPM: 185.1
Min nTPM: 81.1
Sample A Female 185.1
Sample B Female 95.2
Sample C Male 119.6
Sample D Male 81.1
Midbrain
nTPM: 125.0
Samples: 4

Max nTPM: 148.3
Min nTPM: 103.5
Sample A Female 148.3
Sample B Female 118.7
Sample C Male 129.5
Sample D Male 103.5
Periaqueductal gray
nTPM: 92.2
Samples: 3

Max nTPM: 107.5
Min nTPM: 77.2
Sample B Female 92.0
Sample C Male 107.5
Sample D Male 77.2
Superior colliculi
nTPM: 131.1
Samples: 4

Max nTPM: 168.5
Min nTPM: 96.5
Sample A Female 168.5
Sample B Female 96.5
Sample C Male 153.1
Sample D Male 106.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 169.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.6
Samples: 4

Max nTPM: 187.4
Min nTPM: 154.5
Sample A Male 187.4
Sample B Male 161.7
Sample C Female 154.5
Sample D Female 174.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.5
576433 Antisense, RP_040826_01_H09, Mouse strain C57BL/6J (56 days, male) 16.3
81599656 Antisense, RP_071213_04_B01, Mouse strain C57BL/6J (56 days, male) 10.8

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