MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.8 nTPM
HPA Brain:100.5 nTPM
GTEx:42.8 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:4.5 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.9
1830 Male, age 51, unknown 96.2
1833 Male, age 53, unknown 94.1
2411 Female, age 72, unknown 93.2
2019 Male, age 18, unknown 91.4
1870 Female, age 42, unknown 86.4
2586 Male, age 75, left hemisphere 81.0
2828 Female, age 72, unknown 80.7
2219 Male, age 76, both hemispheres 61.0
2666 Male, age 74, left hemisphere 58.5
1827 Male, age 72, unknown 56.2
Dorsal raphe nucleus
nTPM: 56.4
2750 Male, age 76, both hemispheres 78.7
2016 Female, age 72, unknown 64.9
1828 Male, age 53, unknown 58.0
2047 Male, age 72, unknown 40.8
2298 Female, age 72, unknown 39.4
Inferior colliculus
nTPM: 49.5
2849 Male, age 72, unknown 56.6
1890 Male, age 53, unknown 53.1
1848 Female, age 42, unknown 51.7
2097 Female, age 72, unknown 36.7
Median raphe nucleus
nTPM: 46.0
2220 Male, age 76, midline 46.0
Periaquaductal grey, anterior
nTPM: 53.4
2502 Female, age 75, unknown 62.1
1947 Male, age 18, unknown 50.7
1795 Male, age 51, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 49.6
2850 Male, age 76, both hemispheres 63.2
2464 Female, age 72, unknown 60.0
1831 Male, age 72, unknown 46.1
1840 Male, age 53, unknown 29.2
Periaquaductal grey, lateral
nTPM: 55.1
2140 Male, age 76, both hemispheres 59.4
2272 Male, age 74, both hemispheres 54.5
2053 Male, age 18, unknown 51.5
Pretectal area
nTPM: 52.9
2316 Male, age 76, right hemisphere 74.1
1815 Male, age 53, unknown 68.0
2407 Male, age 75, both hemispheres 67.2
2667 Female, age 75, unknown 57.0
2273 Male, age 74, both hemispheres 55.3
2825 Male, age 18, unknown 54.8
1817 Female, age 42, unknown 52.1
2007 Male, age 72, unknown 49.3
2224 Female, age 72, unknown 42.1
1944 Female, age 72, unknown 32.2
1816 Male, age 51, unknown 29.3
Red nucleus
nTPM: 100.5
2769 Male, age 72, unknown 120.5
2227 Male, age 72, unknown 118.4
1865 Male, age 51, unknown 118.1
1904 Male, age 53, unknown 116.3
2785 Male, age 18, unknown 110.5
1821 Female, age 72, unknown 99.9
2823 Male, age 76, right hemisphere 99.5
2503 Female, age 72, unknown 95.6
2588 Male, age 74, left hemisphere 95.5
1954 Female, age 42, unknown 91.1
2584 Male, age 75, left hemisphere 77.3
2725 Female, age 75, unknown 62.8
Substantia nigra
nTPM: 54.5
2583 Male, age 75, right hemisphere 72.1
2699 Male, age 18, unknown 67.7
2590 Female, age 75, unknown 67.0
1851 Male, age 51, unknown 63.5
2409 Female, age 72, unknown 57.6
1889 Female, age 72, unknown 52.3
1941 Male, age 53, unknown 46.7
2665 Male, age 74, both hemispheres 40.6
1916 Female, age 42, unknown 38.8
2241 Male, age 72, unknown 38.8
Superior colliculus
nTPM: 62.9
1995 Male, age 72, unknown 96.4
1913 Female, age 42, unknown 90.4
1839 Male, age 51, unknown 68.8
2664 Male, age 75, both hemispheres 63.2
2587 Male, age 74, left hemisphere 62.6
1895 Male, age 76, right hemisphere 61.8
2668 Female, age 75, unknown 57.7
1796 Male, age 53, unknown 52.6
2087 Female, age 72, unknown 37.7
2261 Male, age 18, unknown 37.7
Ventral tegmental area
nTPM: 61.9
2223 Female, age 72, unknown 83.8
2410 Female, age 72, unknown 73.2
2021 Male, age 53, unknown 58.7
1942 Male, age 51, unknown 58.5
1915 Female, age 42, unknown 49.1
2218 Male, age 76, both hemispheres 48.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.8
Samples: 183

Max nTPM: 166.7
Min nTPM: 9.2
Std nTPM: 21.5
Median nTPM: 37.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 166.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 133.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 120.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 108.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 101.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 92.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 82.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 80.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 80.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 79.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 15.3
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 12.6
Sample C Male 11.3
Sample D Male 15.3
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.0
Sample A Female 8.2
Sample B Female 9.4
Sample C Male 7.4
Sample D Male 7.0
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 12.7
Min nTPM: 11.1
Sample B Female 11.1
Sample C Male 12.7
Sample D Male 11.2
Superior colliculi
nTPM: 7.2
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 8.6
Sample C Male 6.2
Sample D Male 8.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.4
Sample A Male 5.9
Sample B Male 4.3
Sample C Female 3.4
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71664143 Antisense, RP_050927_04_G05, Mouse strain C57BL/6J (56 days, male) 0.2

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