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  • PSMA6
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:77.4 nTPM
HPA Brain:49.2 nTPM
GTEx:77.4 nTPM
FANTOM5:71.9 Scaled Tags Per Million
Pig:52.8 nTPM
Mouse:198.7 nTPM
Allen mouse:8.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.2
Sample id Sample description nTPM
Amygdala
nTPM: 49.2
2514 Male, age 75, right hemisphere 58.0
2814 Male, age 76, right hemisphere 54.4
2695 Female, age 67, right hemisphere 51.7
1987 Female, age 91, left hemisphere 47.2
2517 Female, age 94, left hemisphere 34.6
Basal amygdala
nTPM: 37.3
2609 Male, age 75, right hemisphere 43.3
2243 Female, age 91, right hemisphere 41.9
2110 Male, age 80, left hemisphere 40.7
1955 Male, age 76, both hemispheres 37.4
2685 Female, age 94, left hemisphere 36.3
2827 Female, age 67, right hemisphere 24.3
Central amygdala
nTPM: 40.3
1905 Male, age 76, both hemispheres 45.2
2515 Male, age 75, right hemisphere 43.3
2826 Female, age 94, left hemisphere 40.8
2239 Male, age 80, left hemisphere 37.1
2701 Female, age 91, right hemisphere 35.4
Corticomedial amygdala
nTPM: 40.3
2428 Male, age 75, right hemisphere 48.4
2242 Female, age 91, right hemisphere 45.8
2429 Female, age 94, left hemisphere 43.6
2829 Male, age 80, left hemisphere 41.9
2240 Male, age 76, both hemispheres 37.5
2535 Female, age 67, right hemisphere 24.8
Lateral amygdala
nTPM: 37.9
1883 Male, age 76, both hemispheres 44.8
2516 Male, age 75, right hemisphere 43.6
2534 Female, age 94, left hemisphere 42.0
2256 Male, age 80, left hemisphere 35.3
2255 Female, age 91, right hemisphere 34.0
2830 Female, age 67, right hemisphere 28.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 77.4
Samples: 181

Max nTPM: 172.8
Min nTPM: 54.5
Std nTPM: 17.7
Median nTPM: 73.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 172.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 147.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 136.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 131.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 131.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 123.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 121.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 116.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 114.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 114.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 104.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 103.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 103.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 102.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 100.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 100.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 98.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 97.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 96.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 96.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 95.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 95.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 92.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 92.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 90.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 89.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 89.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 88.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 88.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 87.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 87.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 87.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 87.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 86.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 86.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 86.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 84.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 84.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 83.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 83.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 83.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 83.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 82.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 82.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 82.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 81.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 81.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 81.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 81.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 81.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 80.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 80.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 80.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 80.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 79.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 79.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 79.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 79.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 79.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 78.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 78.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 78.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 77.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 76.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 76.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 76.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 76.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 75.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 75.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 75.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 75.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 75.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 75.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 75.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 75.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 74.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 74.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 74.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 74.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 74.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 74.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 74.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 73.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 73.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 73.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 73.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 73.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 73.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 73.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 72.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 72.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 72.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 72.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 72.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 71.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 71.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 71.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 71.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 71.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 70.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 70.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 70.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 70.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 70.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 69.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 69.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 69.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 69.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 69.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 69.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 69.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 69.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 68.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 68.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 68.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 68.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 68.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 68.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 68.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 68.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 67.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 67.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 67.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 67.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 67.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 67.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 67.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 66.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 65.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 65.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 65.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 65.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 64.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 63.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 63.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 62.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 62.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 62.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 62.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 61.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 61.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 61.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 61.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 60.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 60.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 60.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 59.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 59.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 57.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 57.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 57.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 57.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 57.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 56.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 56.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 56.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 56.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 56.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 55.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 55.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 55.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 54.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 54.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 71.9
FF:10151-102I7 76 years, female 71.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.8
Pig sample Sample description nTPM
Amygdala
nTPM: 52.8
Samples: 4

Max nTPM: 68.8
Min nTPM: 41.4
Sample A Female 68.8
Sample B Female 56.3
Sample C Male 44.5
Sample D Male 41.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 198.7
Samples: 4

Max nTPM: 210.2
Min nTPM: 189.8
Sample A Male 197.7
Sample B Male 210.2
Sample C Female 189.8
Sample D Female 197.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.9
69817408 Antisense, RP_050510_03_C12, Mouse strain C57BL/6J (56 days, male) 8.9

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