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  • TISSUE

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  • PSMA6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:73.6 nTPM
FANTOM5:80.7 Scaled Tags Per Million
Pig:61.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003049
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 73.6
Samples: 300

Max nTPM: 162.7
Min nTPM: 45.9
Std nTPM: 17.9
Median nTPM: 69.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 162.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 156.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 142.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 141.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 129.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 124.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 124.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 122.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 119.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 117.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 117.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 113.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 113.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 112.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 109.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 108.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 108.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 104.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 104.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 103.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 103.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 100.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 100.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 99.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 99.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 97.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 97.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 96.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 96.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 95.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 94.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 94.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 94.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 93.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 93.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 92.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 91.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 91.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 90.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 90.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 89.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 89.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 89.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 88.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 88.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 87.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 87.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 87.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 86.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 86.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 86.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 86.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 86.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 86.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 86.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 85.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 85.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 85.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 84.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 84.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 84.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 84.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 83.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 82.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 81.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 81.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 81.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 80.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 80.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 80.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 80.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 80.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 79.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 79.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 79.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 79.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 79.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 79.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 79.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 79.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 78.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 78.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 78.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 78.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 78.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 78.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 78.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 78.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 78.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 78.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 77.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 77.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 77.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 77.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 77.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 76.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 76.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 75.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 75.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 75.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 75.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 75.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 75.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 75.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 74.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 74.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 74.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 74.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 74.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 74.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 73.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 73.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 73.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 73.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 73.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 73.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 73.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 72.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 72.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 72.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 72.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 72.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 72.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 72.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 72.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 72.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 72.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 72.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 71.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 71.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 71.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 71.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 71.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 71.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 71.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 71.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 71.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 70.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 70.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 70.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 70.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 70.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 70.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 70.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 70.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 70.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 69.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 69.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 69.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 69.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 69.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 69.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 69.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 69.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 69.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 69.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 69.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 69.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 69.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 68.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 68.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 68.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 68.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 68.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 68.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 68.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 67.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 67.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 66.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 66.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 66.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 66.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 66.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 66.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 66.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 66.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 66.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 66.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 66.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 66.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 66.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 66.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 66.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 65.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 65.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 65.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 65.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 65.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 65.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 65.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 65.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 65.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 65.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 65.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 65.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 64.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 64.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 64.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 64.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 64.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 64.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 64.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 64.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 63.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 63.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 63.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 63.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 63.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 63.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 63.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 63.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 63.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 62.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 62.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 62.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 62.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 62.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 62.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 62.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 62.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 62.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 61.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 61.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 61.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 61.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 61.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 61.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 61.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 61.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 60.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 60.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 60.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 60.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 60.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 60.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 60.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 60.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 60.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 60.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 60.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 60.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 60.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 60.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 59.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 59.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 59.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 59.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 59.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 59.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 59.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 59.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 58.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 58.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 58.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 58.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 58.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 58.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 58.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 58.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 58.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 57.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 57.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 56.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 56.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 56.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 56.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 56.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 56.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 56.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 56.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 56.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 56.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 55.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 55.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 55.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 55.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 55.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 54.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 54.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 54.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 54.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 54.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 53.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 53.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 53.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 52.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 52.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 51.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 50.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 49.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 49.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 49.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 48.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 47.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 46.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 46.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 45.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.7
FF:10164-103B2 76 years, female 80.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.5
Pig sample Sample description nTPM
Caudate
nTPM: 61.5
Samples: 4

Max nTPM: 65.6
Min nTPM: 58.3
Sample A Female 62.5
Sample B Female 58.3
Sample C Male 65.6
Sample D Male 59.7

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