MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.6 nTPM
HPA Brain:206.4 nTPM
GTEx:73.6 nTPM
FANTOM5:86.3 Scaled Tags Per Million
Pig:270.2 nTPM
Mouse:73.3 nTPM
Allen mouse:6.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 206.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.3
2828 Female, age 72, unknown 104.1
2586 Male, age 75, left hemisphere 70.1
1827 Male, age 72, unknown 69.6
1870 Female, age 42, unknown 67.9
1833 Male, age 53, unknown 65.8
1830 Male, age 51, unknown 58.9
2019 Male, age 18, unknown 53.3
2411 Female, age 72, unknown 51.8
2666 Male, age 74, left hemisphere 49.1
2219 Male, age 76, both hemispheres 42.6
Dorsal raphe nucleus
nTPM: 162.7
2298 Female, age 72, unknown 269.6
2016 Female, age 72, unknown 232.7
1828 Male, age 53, unknown 153.0
2047 Male, age 72, unknown 102.3
2750 Male, age 76, both hemispheres 56.3
Inferior colliculus
nTPM: 78.0
2849 Male, age 72, unknown 84.8
1848 Female, age 42, unknown 79.2
1890 Male, age 53, unknown 76.7
2097 Female, age 72, unknown 71.3
Median raphe nucleus
nTPM: 63.4
2220 Male, age 76, midline 63.4
Periaquaductal grey, anterior
nTPM: 124.5
1795 Male, age 51, unknown 182.0
2502 Female, age 75, unknown 96.5
1947 Male, age 18, unknown 95.1
Periaquaductal grey, dorsal
nTPM: 161.7
2850 Male, age 76, both hemispheres 232.2
1840 Male, age 53, unknown 186.4
1831 Male, age 72, unknown 126.1
2464 Female, age 72, unknown 102.2
Periaquaductal grey, lateral
nTPM: 206.4
2272 Male, age 74, both hemispheres 285.0
2140 Male, age 76, both hemispheres 187.0
2053 Male, age 18, unknown 147.2
Pretectal area
nTPM: 107.2
2273 Male, age 74, both hemispheres 276.4
2224 Female, age 72, unknown 169.0
2825 Male, age 18, unknown 113.7
2667 Female, age 75, unknown 106.9
2407 Male, age 75, both hemispheres 94.7
1944 Female, age 72, unknown 76.9
2316 Male, age 76, right hemisphere 75.8
1816 Male, age 51, unknown 73.8
1815 Male, age 53, unknown 73.5
1817 Female, age 42, unknown 65.9
2007 Male, age 72, unknown 53.0
Red nucleus
nTPM: 69.9
2725 Female, age 75, unknown 95.9
2769 Male, age 72, unknown 83.5
2227 Male, age 72, unknown 81.6
2503 Female, age 72, unknown 75.4
1821 Female, age 72, unknown 74.4
2823 Male, age 76, right hemisphere 71.4
1904 Male, age 53, unknown 67.1
2584 Male, age 75, left hemisphere 64.1
1865 Male, age 51, unknown 63.3
1954 Female, age 42, unknown 60.9
2785 Male, age 18, unknown 51.8
2588 Male, age 74, left hemisphere 48.7
Substantia nigra
nTPM: 89.4
2699 Male, age 18, unknown 177.9
1916 Female, age 42, unknown 105.3
2590 Female, age 75, unknown 92.6
1851 Male, age 51, unknown 91.4
2409 Female, age 72, unknown 83.1
2241 Male, age 72, unknown 71.4
1889 Female, age 72, unknown 69.3
1941 Male, age 53, unknown 69.0
2665 Male, age 74, both hemispheres 68.8
2583 Male, age 75, right hemisphere 65.2
Superior colliculus
nTPM: 97.2
1995 Male, age 72, unknown 186.1
1913 Female, age 42, unknown 114.6
2587 Male, age 74, left hemisphere 102.3
2664 Male, age 75, both hemispheres 102.0
1796 Male, age 53, unknown 96.6
2261 Male, age 18, unknown 95.0
2087 Female, age 72, unknown 79.4
1839 Male, age 51, unknown 79.0
2668 Female, age 75, unknown 66.5
1895 Male, age 76, right hemisphere 50.2
Ventral tegmental area
nTPM: 84.4
1915 Female, age 42, unknown 109.2
2021 Male, age 53, unknown 93.5
1942 Male, age 51, unknown 85.9
2218 Male, age 76, both hemispheres 79.3
2410 Female, age 72, unknown 75.5
2223 Female, age 72, unknown 62.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.6
Samples: 183

Max nTPM: 233.0
Min nTPM: 6.7
Std nTPM: 38.4
Median nTPM: 67.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 233.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 226.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 200.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 200.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 188.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 142.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 141.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 139.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 138.0
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 134.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 132.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.3
FF:10158-103A5 76 years, female 86.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 270.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 225.5
Samples: 4

Max nTPM: 338.4
Min nTPM: 179.2
Sample A Female 179.2
Sample B Female 338.4
Sample C Male 194.5
Sample D Male 189.8
Midbrain
nTPM: 152.1
Samples: 4

Max nTPM: 239.6
Min nTPM: 104.1
Sample A Female 239.6
Sample B Female 151.2
Sample C Male 104.1
Sample D Male 113.4
Periaqueductal gray
nTPM: 203.9
Samples: 3

Max nTPM: 258.7
Min nTPM: 161.6
Sample B Female 161.6
Sample C Male 258.7
Sample D Male 191.3
Superior colliculi
nTPM: 270.3
Samples: 4

Max nTPM: 446.9
Min nTPM: 112.6
Sample A Female 386.4
Sample B Female 446.9
Sample C Male 112.6
Sample D Male 135.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 86.3
Min nTPM: 65.8
Sample A Male 86.3
Sample B Male 68.0
Sample C Female 65.8
Sample D Female 73.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
74581394 Antisense, RP_060117_02_C03, Mouse strain C57BL/6J (56 days, male) 9.5
68269057 Antisense, RP_041208_01_G08, Mouse strain C57BL/6J (56 days, male) 3.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo