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  • SUMMARY

  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:90.4 nTPM
FANTOM5:116.1 Scaled Tags Per Million
Pig:105.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB032873
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 90.4
Samples: 300

Max nTPM: 350.0
Min nTPM: 10.2
Std nTPM: 48.4
Median nTPM: 80.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 350.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 313.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 256.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 256.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 255.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 239.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 238.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 228.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 226.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 209.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 204.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 199.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 191.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 191.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 184.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 179.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 176.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 169.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 169.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 169.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 168.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 166.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 166.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 163.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 161.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 158.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 156.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 156.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 152.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 152.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 151.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 148.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 147.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 146.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 143.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 143.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 138.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 138.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 136.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 136.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 135.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 134.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 132.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 131.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 131.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 129.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 128.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 127.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 127.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 126.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 126.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 123.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 123.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 122.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 122.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 121.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 120.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 119.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 118.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 118.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 118.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 118.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 115.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 114.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 114.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 113.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 112.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 112.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 112.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 112.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 112.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 111.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 110.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 109.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 109.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 109.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 107.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 105.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 105.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 105.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 104.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 104.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 104.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 104.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 104.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 102.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 102.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 102.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 102.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 102.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 101.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 98.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 98.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 98.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 97.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 97.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 96.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 96.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 96.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 96.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 95.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 95.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 95.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 94.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 94.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 94.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 93.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 93.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 93.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 92.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 92.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 92.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 92.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 91.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 91.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 91.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 91.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 89.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 89.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 89.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 89.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 89.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 89.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 88.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 87.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 87.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 86.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 86.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 85.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 85.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 85.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 84.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 84.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 84.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 84.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 83.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 83.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 83.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 83.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 83.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 83.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 82.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 81.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 81.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 81.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 80.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 80.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 80.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 80.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 80.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 80.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 79.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 79.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 79.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 79.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 79.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 78.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 78.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 78.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 78.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 77.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 77.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 77.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 77.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 75.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 75.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 75.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 75.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 75.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 74.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 74.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 74.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 73.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 73.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 73.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 73.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 72.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 72.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 72.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 72.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 71.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 71.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 71.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 71.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 70.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 70.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 69.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 68.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 68.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 68.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 68.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 67.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 67.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 67.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 67.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 66.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 66.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 66.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 65.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 65.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 63.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 63.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 63.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 63.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 63.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 63.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 62.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 62.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 62.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 62.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 62.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 62.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 62.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 61.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 61.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 61.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 61.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 60.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 59.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 59.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 59.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 58.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 58.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 58.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 57.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 57.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 57.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 57.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 57.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 56.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 56.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 56.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 56.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 56.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 55.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 55.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 55.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 55.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 54.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 54.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 54.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 54.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 54.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 53.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 52.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 52.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 52.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 52.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 52.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 50.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 50.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 49.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 49.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 48.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 48.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 48.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 48.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 48.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 47.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 47.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 47.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 46.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 45.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 45.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 44.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 44.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 43.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 43.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 42.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 41.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 41.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 41.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 41.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 40.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 40.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 40.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 39.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 39.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 39.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 39.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 38.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 38.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 37.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 36.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 36.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 36.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 35.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 35.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 34.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 33.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 31.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 29.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 28.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 28.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 27.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 26.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 18.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 10.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 10.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

116.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 116.1
FF:10164-103B2 76 years, female 116.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.9
Pig sample Sample description nTPM
Caudate
nTPM: 105.9
Samples: 4

Max nTPM: 121.2
Min nTPM: 88.2
Sample A Female 99.1
Sample B Female 115.2
Sample C Male 121.2
Sample D Male 88.2

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