MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.1 nTPM
HPA Brain:13.2 nTPM
GTEx:3.1 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:13.6 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2411 Female, age 72, unknown 14.2
1870 Female, age 42, unknown 14.0
1833 Male, age 53, unknown 13.6
1827 Male, age 72, unknown 13.5
2019 Male, age 18, unknown 13.4
2828 Female, age 72, unknown 13.2
1830 Male, age 51, unknown 12.1
2219 Male, age 76, both hemispheres 11.0
2586 Male, age 75, left hemisphere 10.4
2666 Male, age 74, left hemisphere 10.3
Dorsal raphe nucleus
nTPM: 11.7
2750 Male, age 76, both hemispheres 12.5
1828 Male, age 53, unknown 12.2
2016 Female, age 72, unknown 11.5
2047 Male, age 72, unknown 11.4
2298 Female, age 72, unknown 11.0
Inferior colliculus
nTPM: 12.0
2097 Female, age 72, unknown 13.5
1848 Female, age 42, unknown 12.2
2849 Male, age 72, unknown 11.6
1890 Male, age 53, unknown 10.8
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Periaquaductal grey, anterior
nTPM: 12.2
1947 Male, age 18, unknown 13.2
2502 Female, age 75, unknown 12.6
1795 Male, age 51, unknown 10.6
Periaquaductal grey, dorsal
nTPM: 12.5
2850 Male, age 76, both hemispheres 13.0
1840 Male, age 53, unknown 12.8
2464 Female, age 72, unknown 12.4
1831 Male, age 72, unknown 11.8
Periaquaductal grey, lateral
nTPM: 12.3
2053 Male, age 18, unknown 13.0
2272 Male, age 74, both hemispheres 12.7
2140 Male, age 76, both hemispheres 11.1
Pretectal area
nTPM: 13.2
1817 Female, age 42, unknown 15.2
1815 Male, age 53, unknown 14.3
2273 Male, age 74, both hemispheres 13.9
2007 Male, age 72, unknown 13.4
1816 Male, age 51, unknown 13.3
2667 Female, age 75, unknown 13.0
2224 Female, age 72, unknown 12.9
2316 Male, age 76, right hemisphere 12.9
2825 Male, age 18, unknown 12.5
2407 Male, age 75, both hemispheres 12.3
1944 Female, age 72, unknown 11.6
Red nucleus
nTPM: 12.5
1821 Female, age 72, unknown 14.5
1865 Male, age 51, unknown 13.7
2503 Female, age 72, unknown 13.1
1904 Male, age 53, unknown 13.0
1954 Female, age 42, unknown 12.9
2725 Female, age 75, unknown 12.6
2823 Male, age 76, right hemisphere 12.6
2227 Male, age 72, unknown 12.5
2584 Male, age 75, left hemisphere 11.5
2588 Male, age 74, left hemisphere 11.4
2785 Male, age 18, unknown 11.1
2769 Male, age 72, unknown 10.9
Substantia nigra
nTPM: 11.0
2409 Female, age 72, unknown 12.4
2241 Male, age 72, unknown 11.9
2590 Female, age 75, unknown 11.9
1889 Female, age 72, unknown 11.2
1941 Male, age 53, unknown 10.7
1851 Male, age 51, unknown 10.6
2583 Male, age 75, right hemisphere 10.5
2665 Male, age 74, both hemispheres 10.5
1916 Female, age 42, unknown 10.2
2699 Male, age 18, unknown 9.9
Superior colliculus
nTPM: 12.2
1895 Male, age 76, right hemisphere 14.2
1913 Female, age 42, unknown 14.2
1839 Male, age 51, unknown 13.4
1995 Male, age 72, unknown 13.0
2261 Male, age 18, unknown 12.8
2087 Female, age 72, unknown 12.1
2587 Male, age 74, left hemisphere 11.5
2668 Female, age 75, unknown 10.8
2664 Male, age 75, both hemispheres 10.3
1796 Male, age 53, unknown 10.2
Ventral tegmental area
nTPM: 11.4
2410 Female, age 72, unknown 12.9
2218 Male, age 76, both hemispheres 12.1
2021 Male, age 53, unknown 11.7
2223 Female, age 72, unknown 11.4
1942 Male, age 51, unknown 11.3
1915 Female, age 42, unknown 9.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.1
Samples: 183

Max nTPM: 6.7
Min nTPM: 0.8
Std nTPM: 0.9
Median nTPM: 3.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 6.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 5.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 5.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 4.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 4.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 4.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 4.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 14.3
Sample A Female 15.4
Sample B Female 14.3
Sample C Male 15.5
Sample D Male 14.4
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 14.5
Sample C Male 17.2
Sample D Male 17.5
Periaqueductal gray
nTPM: 15.4
Samples: 3

Max nTPM: 15.8
Min nTPM: 15.0
Sample B Female 15.8
Sample C Male 15.5
Sample D Male 15.0
Superior colliculi
nTPM: 15.8
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.8
Sample A Female 16.2
Sample B Female 13.8
Sample C Male 17.2
Sample D Male 16.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.4
Sample A Male 14.5
Sample B Male 12.4
Sample C Female 14.3
Sample D Female 13.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
67881786 Antisense, RP_040923_01_A04, Mouse strain C57BL/6J (56 days, male) 0.5
70918820 Antisense, RP_050712_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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