HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:18.6 nTPM
HPA Brain:40.0 nTPM
GTEx:18.6 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:99.1 nTPM
Allen mouse:13.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051019Antibody HPA056273
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 40.0
Sample id Sample description nTPM
Hippocampus
nTPM: 38.2
2148 Female, age 91, left hemisphere 43.2
2621 Female, age 67, right hemisphere 42.8
1855 Male, age 76, left hemisphere 40.4
1898 Male, age 80, left hemisphere 36.3
2529 Female, age 94, left hemisphere 35.3
1911 Female, age 85, right hemisphere 31.0
Dentate gyrus
nTPM: 38.3
2531 Female, age 67, both hemispheres 45.9
2530 Female, age 94, left hemisphere 43.2
1927 Female, age 91, both hemispheres 36.4
2246 Female, age 85, both hemispheres 35.4
2010 Male, age 76, both hemispheres 35.0
2528 Male, age 74, both hemispheres 34.0
Entorhinal gyrus
nTPM: 39.3
2613 Female, age 94, left hemisphere 50.5
2686 Male, age 75, right hemisphere 42.8
2764 Male, age 80, right hemisphere 40.2
1787 Male, age 76, left hemisphere 39.5
1938 Female, age 85, left hemisphere 37.9
2117 Female, age 91, right hemisphere 25.1
Hippocampus, CA1
nTPM: 35.5
2749 Male, age 80, left hemisphere 41.2
1873 Female, age 85, both hemispheres 37.8
2045 Male, age 76, both hemispheres 34.3
2082 Female, age 91, right hemisphere 32.2
2527 Male, age 74, both hemispheres 32.2
Hippocampus, CA2
nTPM: 35.9
1963 Male, age 80, left hemisphere 44.6
1892 Male, age 76, both hemispheres 39.6
1940 Female, age 85, left hemisphere 36.9
2437 Female, age 94, left hemisphere 35.4
2249 Male, age 74, both hemispheres 30.2
2113 Female, age 91, right hemisphere 28.7
Hippocampus, CA3
nTPM: 40.0
2861 Female, age 67, both hemispheres 54.9
2620 Female, age 94, left hemisphere 50.0
2137 Male, age 80, left hemisphere 41.8
1867 Male, age 76, both hemispheres 36.2
2436 Male, age 74, both hemispheres 29.5
1891 Female, age 85, both hemispheres 27.5
Parahippocampal cortex
nTPM: 37.9
2622 Female, age 67, right hemisphere 51.3
2532 Female, age 72, left hemisphere 42.4
1933 Female, age 85, both hemispheres 38.9
2692 Male, age 74, both hemispheres 38.2
2245 Female, age 91, both hemispheres 37.7
1850 Male, age 80, both hemispheres 36.3
2693 Female, age 94, both hemispheres 36.0
1990 Female, age 91, right hemisphere 33.6
2250 Female, age 67, right hemisphere 33.5
2018 Male, age 76, both hemispheres 31.4
Perirhinal gyrus
nTPM: 38.7
1794 Male, age 80, right hemisphere 41.5
2521 Female, age 94, right hemisphere 40.7
1841 Female, age 85, right hemisphere 37.5
2848 Male, age 76, right hemisphere 37.4
1847 Female, age 91, left hemisphere 36.6
Subiculum
nTPM: 35.2
2619 Male, age 74, both hemispheres 39.9
1977 Female, age 85, both hemispheres 36.6
2438 Female, age 94, left hemisphere 35.1
2042 Male, age 76, both hemispheres 33.5
1901 Male, age 80, both hemispheres 33.2
2729 Female, age 91, right hemisphere 33.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 18.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.6
Samples: 255

Max nTPM: 46.3
Min nTPM: 5.3
Std nTPM: 7.7
Median nTPM: 17.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 46.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 46.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 46.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 41.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 38.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 37.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 37.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 37.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 36.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 35.4
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 34.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.5
FF:10153-102I9 76 years, female 39.0
FF:10169-103B7 60 years, female 25.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 29.5
Pig sample Sample description nTPM
Subiculum
nTPM: 27.9
Samples: 4

Max nTPM: 34.3
Min nTPM: 24.7
Sample A Female 34.3
Sample B Female 27.1
Sample C Male 24.7
Sample D Male 25.6
Dorsal hippocampus
nTPM: 29.3
Samples: 4

Max nTPM: 36.3
Min nTPM: 22.3
Sample A Female 36.3
Sample B Female 30.1
Sample C Male 28.6
Sample D Male 22.3
Entorhinal cortex
nTPM: 29.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 27.7
Sample A Female 28.6
Sample B Female 32.2
Sample C Male 29.6
Sample D Male 27.7
Ventral hippocampus
nTPM: 29.5
Samples: 4

Max nTPM: 34.5
Min nTPM: 21.8
Sample A Female 27.6
Sample B Female 21.8
Sample C Male 34.0
Sample D Male 34.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 99.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.1
Samples: 4

Max nTPM: 104.1
Min nTPM: 92.3
Sample A Male 96.2
Sample B Male 104.1
Sample C Female 92.3
Sample D Female 103.8
Hippocampal formation
nTPM: 96.4
Samples: 4

Max nTPM: 100.2
Min nTPM: 93.6
Sample A Male 100.2
Sample B Male 93.9
Sample C Female 97.7
Sample D Female 93.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.6
68845281 Antisense, RP_050224_01_E02, Mouse strain C57BL/6J (56 days, male) 13.6

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