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MAP1LC3A
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MAP1LC3A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:119.2 nTPM
FANTOM5:169.6 Scaled Tags Per Million
Pig:117.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007649Antibody HPA052474Antibody HPA052484Antibody CAB037174
Glial cells LowNot detectedLowNot detected
Neuronal cells HighHighHighHigh






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 119.2
Samples: 300

Max nTPM: 372.8
Min nTPM: 51.3
Std nTPM: 34.9
Median nTPM: 115.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 372.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 214.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 212.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 207.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 207.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 205.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 203.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 200.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 187.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 184.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 184.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 182.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 181.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 181.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 180.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 179.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 177.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 176.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 176.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 174.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 173.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 172.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 171.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 166.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 165.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 163.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 161.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 160.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 159.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 158.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 157.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 156.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 156.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 155.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 154.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 153.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 153.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 153.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 151.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 150.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 150.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 150.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 149.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 148.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 147.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 147.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 147.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 147.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 147.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 146.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 146.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 146.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 146.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 145.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 145.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 144.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 143.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 143.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 143.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 142.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 142.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 141.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 140.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 139.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 139.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 138.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 138.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 138.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 138.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 138.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 137.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 137.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 137.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 137.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 136.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 136.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 136.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 136.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 135.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 135.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 135.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 135.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 135.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 135.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 135.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 135.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 134.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 134.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 134.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 134.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 134.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 134.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 133.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 133.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 133.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 132.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 132.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 132.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 131.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 131.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 131.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 131.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 130.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 130.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 130.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 129.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 129.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 129.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 128.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 128.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 127.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 127.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 127.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 126.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 126.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 126.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 126.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 126.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 126.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 125.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 125.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 124.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 123.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 123.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 123.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 123.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 122.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 122.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 122.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 121.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 121.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 120.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 120.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 119.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 118.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 118.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 118.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 118.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 118.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 118.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 118.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 117.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 117.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 117.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 117.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 116.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 116.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 115.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 115.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 115.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 115.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 115.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 115.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 114.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 114.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 114.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 114.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 114.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 113.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 113.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 113.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 113.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 112.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 112.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 112.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 112.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 111.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 111.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 111.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 111.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 111.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 111.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 111.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 110.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 110.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 110.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 110.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 110.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 110.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 109.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 109.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 108.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 108.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 108.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 108.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 108.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 107.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 107.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 107.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 106.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 106.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 106.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 106.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 106.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 105.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 105.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 105.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 105.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 105.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 105.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 104.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 104.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 103.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 103.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 102.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 102.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 102.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 102.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 102.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 101.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 100.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 100.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 100.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 100.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 100.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 100.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 99.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 99.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 99.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 99.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 99.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 98.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 98.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 97.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 97.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 97.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 96.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 96.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 95.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 95.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 95.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 95.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 94.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 94.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 94.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 93.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 93.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 93.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 93.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 93.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 92.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 92.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 91.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 91.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 90.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 89.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 89.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 88.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 88.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 87.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 86.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 86.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 86.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 85.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 84.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 83.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 83.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 81.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 81.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 81.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 80.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 79.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 79.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 79.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 78.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 78.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 78.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 77.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 76.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 76.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 75.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 75.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 75.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 74.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 74.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 73.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 73.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 72.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 71.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 70.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 68.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 68.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 67.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 66.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 66.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 66.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 63.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 63.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 63.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 62.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 62.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 62.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 61.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 61.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 60.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 53.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 51.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

169.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 169.6
FF:10164-103B2 76 years, female 169.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.4
Pig sample Sample description nTPM
Caudate
nTPM: 117.4
Samples: 4

Max nTPM: 137.7
Min nTPM: 99.5
Sample A Female 106.8
Sample B Female 125.6
Sample C Male 137.7
Sample D Male 99.5

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