MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:196.5 nTPM
HPA Brain:220.9 nTPM
GTEx:196.5 nTPM
FANTOM5:142.0 Scaled Tags Per Million
Pig:179.1 nTPM
Mouse:31.1 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 220.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.8
2586 Male, age 75, left hemisphere 207.7
2666 Male, age 74, left hemisphere 195.8
2219 Male, age 76, both hemispheres 184.3
2411 Female, age 72, unknown 175.8
1827 Male, age 72, unknown 156.7
1870 Female, age 42, unknown 151.6
2828 Female, age 72, unknown 141.3
1833 Male, age 53, unknown 132.4
2019 Male, age 18, unknown 121.6
1830 Male, age 51, unknown 120.7
Dorsal raphe nucleus
nTPM: 177.8
2298 Female, age 72, unknown 212.3
2047 Male, age 72, unknown 205.3
2750 Male, age 76, both hemispheres 197.2
1828 Male, age 53, unknown 166.0
2016 Female, age 72, unknown 108.1
Inferior colliculus
nTPM: 129.0
2849 Male, age 72, unknown 134.1
2097 Female, age 72, unknown 132.4
1890 Male, age 53, unknown 131.1
1848 Female, age 42, unknown 118.5
Median raphe nucleus
nTPM: 220.9
2220 Male, age 76, midline 220.9
Periaquaductal grey, anterior
nTPM: 162.6
1795 Male, age 51, unknown 185.7
1947 Male, age 18, unknown 161.2
2502 Female, age 75, unknown 140.9
Periaquaductal grey, dorsal
nTPM: 122.8
1840 Male, age 53, unknown 129.4
2850 Male, age 76, both hemispheres 129.3
1831 Male, age 72, unknown 118.0
2464 Female, age 72, unknown 114.4
Periaquaductal grey, lateral
nTPM: 111.1
2053 Male, age 18, unknown 126.2
2272 Male, age 74, both hemispheres 104.0
2140 Male, age 76, both hemispheres 103.1
Pretectal area
nTPM: 161.3
1816 Male, age 51, unknown 221.3
2007 Male, age 72, unknown 199.8
1817 Female, age 42, unknown 198.6
1815 Male, age 53, unknown 186.1
1944 Female, age 72, unknown 180.0
2667 Female, age 75, unknown 161.5
2224 Female, age 72, unknown 161.1
2825 Male, age 18, unknown 150.6
2407 Male, age 75, both hemispheres 115.8
2316 Male, age 76, right hemisphere 109.2
2273 Male, age 74, both hemispheres 90.5
Red nucleus
nTPM: 143.2
2584 Male, age 75, left hemisphere 183.9
2588 Male, age 74, left hemisphere 157.9
1821 Female, age 72, unknown 152.0
2227 Male, age 72, unknown 144.4
2769 Male, age 72, unknown 143.6
2785 Male, age 18, unknown 139.3
2503 Female, age 72, unknown 138.9
2725 Female, age 75, unknown 138.8
1904 Male, age 53, unknown 134.8
1954 Female, age 42, unknown 131.0
2823 Male, age 76, right hemisphere 129.5
1865 Male, age 51, unknown 124.5
Substantia nigra
nTPM: 207.7
1916 Female, age 42, unknown 309.9
2665 Male, age 74, both hemispheres 252.5
1851 Male, age 51, unknown 228.7
1941 Male, age 53, unknown 219.6
2699 Male, age 18, unknown 207.8
1889 Female, age 72, unknown 206.1
2583 Male, age 75, right hemisphere 191.0
2241 Male, age 72, unknown 173.0
2409 Female, age 72, unknown 160.5
2590 Female, age 75, unknown 127.8
Superior colliculus
nTPM: 150.3
2668 Female, age 75, unknown 261.4
2261 Male, age 18, unknown 169.0
2087 Female, age 72, unknown 166.2
1796 Male, age 53, unknown 161.8
2664 Male, age 75, both hemispheres 146.9
1913 Female, age 42, unknown 127.2
1839 Male, age 51, unknown 125.0
2587 Male, age 74, left hemisphere 124.9
1895 Male, age 76, right hemisphere 112.1
1995 Male, age 72, unknown 108.7
Ventral tegmental area
nTPM: 187.1
2218 Male, age 76, both hemispheres 219.3
1915 Female, age 42, unknown 208.8
2410 Female, age 72, unknown 203.4
1942 Male, age 51, unknown 172.8
2223 Female, age 72, unknown 162.6
2021 Male, age 53, unknown 155.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 196.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 196.5
Samples: 183

Max nTPM: 441.2
Min nTPM: 57.4
Std nTPM: 81.0
Median nTPM: 184.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 441.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 432.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 412.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 405.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 383.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 379.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 362.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 361.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 353.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 350.2
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 346.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 142.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.0
FF:10158-103A5 76 years, female 142.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 179.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 174.7
Samples: 4

Max nTPM: 263.0
Min nTPM: 108.4
Sample A Female 263.0
Sample B Female 129.8
Sample C Male 197.7
Sample D Male 108.4
Midbrain
nTPM: 177.6
Samples: 4

Max nTPM: 244.9
Min nTPM: 134.7
Sample A Female 134.7
Sample B Female 174.5
Sample C Male 244.9
Sample D Male 156.4
Periaqueductal gray
nTPM: 137.9
Samples: 3

Max nTPM: 167.0
Min nTPM: 108.5
Sample B Female 138.2
Sample C Male 167.0
Sample D Male 108.5
Superior colliculi
nTPM: 179.1
Samples: 4

Max nTPM: 221.6
Min nTPM: 135.8
Sample A Female 221.6
Sample B Female 135.8
Sample C Male 207.9
Sample D Male 151.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 36.2
Min nTPM: 23.4
Sample A Male 36.2
Sample B Male 30.7
Sample C Female 23.4
Sample D Female 34.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69751973 Antisense, RP_050503_04_H01, Mouse strain C57BL/6J (56 days, male) 1.8

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