MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.5 nTPM
HPA Brain:63.1 nTPM
GTEx:15.5 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:15.2 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.4
1833 Male, age 53, unknown 54.9
1830 Male, age 51, unknown 53.6
1870 Female, age 42, unknown 53.4
2828 Female, age 72, unknown 50.7
2411 Female, age 72, unknown 48.5
2219 Male, age 76, both hemispheres 43.5
2586 Male, age 75, left hemisphere 42.6
2019 Male, age 18, unknown 41.6
1827 Male, age 72, unknown 37.7
2666 Male, age 74, left hemisphere 37.7
Dorsal raphe nucleus
nTPM: 49.7
1828 Male, age 53, unknown 53.1
2750 Male, age 76, both hemispheres 53.1
2016 Female, age 72, unknown 51.7
2047 Male, age 72, unknown 49.4
2298 Female, age 72, unknown 41.3
Inferior colliculus
nTPM: 46.5
2849 Male, age 72, unknown 49.8
1848 Female, age 42, unknown 48.2
1890 Male, age 53, unknown 46.9
2097 Female, age 72, unknown 41.1
Median raphe nucleus
nTPM: 40.4
2220 Male, age 76, midline 40.4
Periaquaductal grey, anterior
nTPM: 45.5
1947 Male, age 18, unknown 49.9
2502 Female, age 75, unknown 49.4
1795 Male, age 51, unknown 37.2
Periaquaductal grey, dorsal
nTPM: 46.3
2850 Male, age 76, both hemispheres 54.4
2464 Female, age 72, unknown 48.3
1840 Male, age 53, unknown 43.6
1831 Male, age 72, unknown 38.9
Periaquaductal grey, lateral
nTPM: 48.3
2140 Male, age 76, both hemispheres 60.4
2053 Male, age 18, unknown 48.5
2272 Male, age 74, both hemispheres 36.1
Pretectal area
nTPM: 40.9
2667 Female, age 75, unknown 51.8
2316 Male, age 76, right hemisphere 49.2
2825 Male, age 18, unknown 49.0
2273 Male, age 74, both hemispheres 48.5
2224 Female, age 72, unknown 43.2
1815 Male, age 53, unknown 41.1
1817 Female, age 42, unknown 38.0
2407 Male, age 75, both hemispheres 37.3
1944 Female, age 72, unknown 33.3
1816 Male, age 51, unknown 29.9
2007 Male, age 72, unknown 29.1
Red nucleus
nTPM: 63.1
1865 Male, age 51, unknown 76.3
1821 Female, age 72, unknown 76.1
1904 Male, age 53, unknown 74.6
2227 Male, age 72, unknown 73.1
2769 Male, age 72, unknown 72.6
1954 Female, age 42, unknown 70.1
2503 Female, age 72, unknown 65.9
2823 Male, age 76, right hemisphere 64.8
2588 Male, age 74, left hemisphere 55.9
2785 Male, age 18, unknown 47.7
2725 Female, age 75, unknown 44.7
2584 Male, age 75, left hemisphere 34.7
Substantia nigra
nTPM: 46.6
2699 Male, age 18, unknown 61.2
2409 Female, age 72, unknown 60.0
1851 Male, age 51, unknown 51.2
2590 Female, age 75, unknown 45.7
1916 Female, age 42, unknown 45.2
1889 Female, age 72, unknown 43.8
2241 Male, age 72, unknown 43.8
2583 Male, age 75, right hemisphere 40.6
2665 Male, age 74, both hemispheres 38.0
1941 Male, age 53, unknown 36.4
Superior colliculus
nTPM: 44.3
1995 Male, age 72, unknown 59.8
1913 Female, age 42, unknown 57.3
1895 Male, age 76, right hemisphere 48.2
1839 Male, age 51, unknown 44.8
2587 Male, age 74, left hemisphere 44.1
2668 Female, age 75, unknown 42.7
1796 Male, age 53, unknown 39.0
2664 Male, age 75, both hemispheres 37.9
2087 Female, age 72, unknown 35.3
2261 Male, age 18, unknown 33.7
Ventral tegmental area
nTPM: 47.6
2223 Female, age 72, unknown 55.8
2410 Female, age 72, unknown 53.3
1942 Male, age 51, unknown 46.2
2218 Male, age 76, both hemispheres 44.2
2021 Male, age 53, unknown 43.6
1915 Female, age 42, unknown 42.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.5
Samples: 183

Max nTPM: 45.8
Min nTPM: 4.2
Std nTPM: 6.5
Median nTPM: 14.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 45.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 38.7
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 37.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 36.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 35.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 33.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 31.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 29.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 26.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.8
Samples: 4

Max nTPM: 42.1
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 30.3
Sample C Male 34.2
Sample D Male 42.1
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 40.0
Min nTPM: 21.7
Sample A Female 32.3
Sample B Female 40.0
Sample C Male 21.7
Sample D Male 23.4
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 39.2
Min nTPM: 28.9
Sample B Female 39.2
Sample C Male 28.9
Sample D Male 30.9
Superior colliculi
nTPM: 21.8
Samples: 4

Max nTPM: 28.3
Min nTPM: 13.1
Sample A Female 22.2
Sample B Female 13.1
Sample C Male 23.7
Sample D Male 28.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.8
Sample A Male 15.5
Sample B Male 13.8
Sample C Female 16.0
Sample D Female 15.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
77464878 Antisense, RP_070129_02_C11, Mouse strain C57BL/6J (56 days, male) 1.2

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