MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.1 nTPM
HPA Brain:115.7 nTPM
GTEx:93.1 nTPM
FANTOM5:240.8 Scaled Tags Per Million
Pig:215.8 nTPM
Mouse:719.2 nTPM
Allen mouse:20.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 115.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.7
2019 Male, age 18, unknown 126.5
2411 Female, age 72, unknown 108.1
1827 Male, age 72, unknown 102.7
2666 Male, age 74, left hemisphere 85.6
1870 Female, age 42, unknown 83.3
2828 Female, age 72, unknown 83.0
1833 Male, age 53, unknown 79.1
2219 Male, age 76, both hemispheres 75.0
2586 Male, age 75, left hemisphere 72.2
1830 Male, age 51, unknown 71.6
Dorsal raphe nucleus
nTPM: 99.7
2298 Female, age 72, unknown 135.5
1828 Male, age 53, unknown 99.6
2047 Male, age 72, unknown 94.7
2750 Male, age 76, both hemispheres 92.6
2016 Female, age 72, unknown 75.8
Inferior colliculus
nTPM: 115.7
2097 Female, age 72, unknown 173.7
1890 Male, age 53, unknown 118.4
1848 Female, age 42, unknown 98.4
2849 Male, age 72, unknown 72.4
Median raphe nucleus
nTPM: 109.1
2220 Male, age 76, midline 109.1
Periaquaductal grey, anterior
nTPM: 93.6
2502 Female, age 75, unknown 97.0
1947 Male, age 18, unknown 92.9
1795 Male, age 51, unknown 90.8
Periaquaductal grey, dorsal
nTPM: 79.4
2464 Female, age 72, unknown 87.6
1831 Male, age 72, unknown 82.7
1840 Male, age 53, unknown 76.6
2850 Male, age 76, both hemispheres 70.7
Periaquaductal grey, lateral
nTPM: 77.0
2272 Male, age 74, both hemispheres 86.1
2140 Male, age 76, both hemispheres 74.0
2053 Male, age 18, unknown 70.8
Pretectal area
nTPM: 114.4
1817 Female, age 42, unknown 160.6
2007 Male, age 72, unknown 158.7
1816 Male, age 51, unknown 156.3
1944 Female, age 72, unknown 142.9
1815 Male, age 53, unknown 115.0
2667 Female, age 75, unknown 112.3
2224 Female, age 72, unknown 98.0
2273 Male, age 74, both hemispheres 93.5
2316 Male, age 76, right hemisphere 81.3
2825 Male, age 18, unknown 73.2
2407 Male, age 75, both hemispheres 67.2
Red nucleus
nTPM: 95.3
1821 Female, age 72, unknown 130.6
2785 Male, age 18, unknown 119.3
2725 Female, age 75, unknown 109.8
1954 Female, age 42, unknown 100.7
2503 Female, age 72, unknown 96.9
1865 Male, age 51, unknown 92.1
2823 Male, age 76, right hemisphere 88.4
2769 Male, age 72, unknown 87.9
1904 Male, age 53, unknown 87.3
2227 Male, age 72, unknown 86.6
2588 Male, age 74, left hemisphere 77.0
2584 Male, age 75, left hemisphere 67.4
Substantia nigra
nTPM: 110.8
1916 Female, age 42, unknown 150.1
2241 Male, age 72, unknown 136.5
1889 Female, age 72, unknown 134.4
1941 Male, age 53, unknown 123.3
1851 Male, age 51, unknown 120.1
2409 Female, age 72, unknown 117.6
2665 Male, age 74, both hemispheres 94.8
2590 Female, age 75, unknown 80.9
2699 Male, age 18, unknown 75.7
2583 Male, age 75, right hemisphere 74.6
Superior colliculus
nTPM: 90.4
2087 Female, age 72, unknown 138.1
2261 Male, age 18, unknown 110.5
1796 Male, age 53, unknown 101.4
2668 Female, age 75, unknown 93.9
1895 Male, age 76, right hemisphere 90.4
2587 Male, age 74, left hemisphere 85.7
1839 Male, age 51, unknown 78.9
1913 Female, age 42, unknown 78.9
1995 Male, age 72, unknown 70.6
2664 Male, age 75, both hemispheres 55.5
Ventral tegmental area
nTPM: 104.4
2410 Female, age 72, unknown 123.5
1915 Female, age 42, unknown 122.9
2218 Male, age 76, both hemispheres 114.8
1942 Male, age 51, unknown 92.1
2223 Female, age 72, unknown 90.3
2021 Male, age 53, unknown 83.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.1
Samples: 183

Max nTPM: 214.5
Min nTPM: 33.7
Std nTPM: 35.2
Median nTPM: 82.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 214.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 214.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 205.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 203.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 177.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 175.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 175.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 172.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 172.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 165.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 164.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 240.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 240.8
FF:10158-103A5 76 years, female 240.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 215.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 169.1
Samples: 4

Max nTPM: 231.7
Min nTPM: 131.3
Sample A Female 231.7
Sample B Female 135.6
Sample C Male 177.7
Sample D Male 131.3
Midbrain
nTPM: 206.7
Samples: 4

Max nTPM: 258.4
Min nTPM: 164.9
Sample A Female 258.4
Sample B Female 164.9
Sample C Male 227.3
Sample D Male 176.0
Periaqueductal gray
nTPM: 144.4
Samples: 3

Max nTPM: 160.4
Min nTPM: 126.5
Sample B Female 146.3
Sample C Male 160.4
Sample D Male 126.5
Superior colliculi
nTPM: 215.8
Samples: 4

Max nTPM: 257.3
Min nTPM: 181.8
Sample A Female 236.1
Sample B Female 187.9
Sample C Male 257.3
Sample D Male 181.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 719.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 719.2
Samples: 4

Max nTPM: 752.6
Min nTPM: 692.5
Sample A Male 722.2
Sample B Male 709.6
Sample C Female 692.5
Sample D Female 752.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.8
69783047 Antisense, RP_050505_04_C05, Mouse strain C57BL/6J (56 days, male) 20.8

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