MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.5 nTPM
HPA Brain:44.6 nTPM
GTEx:105.5 nTPM
FANTOM5:57.6 Scaled Tags Per Million
Pig:74.5 nTPM
Mouse:1.1 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.2
2828 Female, age 72, unknown 35.0
2586 Male, age 75, left hemisphere 34.0
2666 Male, age 74, left hemisphere 32.6
1870 Female, age 42, unknown 30.5
1833 Male, age 53, unknown 27.8
1830 Male, age 51, unknown 25.9
1827 Male, age 72, unknown 25.6
2219 Male, age 76, both hemispheres 25.6
2019 Male, age 18, unknown 22.8
2411 Female, age 72, unknown 22.0
Dorsal raphe nucleus
nTPM: 38.3
2016 Female, age 72, unknown 39.7
2750 Male, age 76, both hemispheres 39.7
2047 Male, age 72, unknown 38.7
2298 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 36.0
Inferior colliculus
nTPM: 34.8
1890 Male, age 53, unknown 43.8
1848 Female, age 42, unknown 34.0
2849 Male, age 72, unknown 33.3
2097 Female, age 72, unknown 28.1
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Periaquaductal grey, anterior
nTPM: 34.8
1795 Male, age 51, unknown 37.4
2502 Female, age 75, unknown 36.6
1947 Male, age 18, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 40.4
2850 Male, age 76, both hemispheres 47.4
1831 Male, age 72, unknown 43.3
1840 Male, age 53, unknown 42.3
2464 Female, age 72, unknown 28.6
Periaquaductal grey, lateral
nTPM: 44.6
2140 Male, age 76, both hemispheres 48.0
2053 Male, age 18, unknown 44.6
2272 Male, age 74, both hemispheres 41.2
Pretectal area
nTPM: 30.7
2825 Male, age 18, unknown 44.1
2273 Male, age 74, both hemispheres 39.7
2316 Male, age 76, right hemisphere 33.2
2224 Female, age 72, unknown 30.0
2667 Female, age 75, unknown 29.7
1944 Female, age 72, unknown 28.8
1817 Female, age 42, unknown 28.1
2407 Male, age 75, both hemispheres 27.7
1816 Male, age 51, unknown 26.6
1815 Male, age 53, unknown 26.3
2007 Male, age 72, unknown 23.5
Red nucleus
nTPM: 31.7
2823 Male, age 76, right hemisphere 39.3
2227 Male, age 72, unknown 34.8
2584 Male, age 75, left hemisphere 34.8
2725 Female, age 75, unknown 34.6
1821 Female, age 72, unknown 33.2
2503 Female, age 72, unknown 32.9
1954 Female, age 42, unknown 32.0
2769 Male, age 72, unknown 31.7
1904 Male, age 53, unknown 30.9
1865 Male, age 51, unknown 30.3
2588 Male, age 74, left hemisphere 26.0
2785 Male, age 18, unknown 19.8
Substantia nigra
nTPM: 35.3
2699 Male, age 18, unknown 56.6
1851 Male, age 51, unknown 40.5
1916 Female, age 42, unknown 38.9
2665 Male, age 74, both hemispheres 36.3
2409 Female, age 72, unknown 32.1
2241 Male, age 72, unknown 31.8
2590 Female, age 75, unknown 31.8
1889 Female, age 72, unknown 30.4
2583 Male, age 75, right hemisphere 28.0
1941 Male, age 53, unknown 26.8
Superior colliculus
nTPM: 31.7
1995 Male, age 72, unknown 39.6
1839 Male, age 51, unknown 34.5
1913 Female, age 42, unknown 33.7
1796 Male, age 53, unknown 33.1
2587 Male, age 74, left hemisphere 32.9
2664 Male, age 75, both hemispheres 29.8
2668 Female, age 75, unknown 29.8
2261 Male, age 18, unknown 28.6
2087 Female, age 72, unknown 27.9
1895 Male, age 76, right hemisphere 27.1
Ventral tegmental area
nTPM: 40.2
1915 Female, age 42, unknown 50.9
2021 Male, age 53, unknown 44.4
2218 Male, age 76, both hemispheres 40.4
2223 Female, age 72, unknown 40.4
1942 Male, age 51, unknown 36.1
2410 Female, age 72, unknown 28.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 105.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.5
Samples: 183

Max nTPM: 702.9
Min nTPM: 8.5
Std nTPM: 111.5
Median nTPM: 65.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 702.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 559.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 529.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 520.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 476.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 440.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 404.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 397.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 344.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 323.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 322.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.1
Samples: 4

Max nTPM: 68.4
Min nTPM: 18.2
Sample A Female 27.9
Sample B Female 68.4
Sample C Male 18.2
Sample D Male 26.0
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 39.1
Min nTPM: 12.9
Sample A Female 39.1
Sample B Female 23.2
Sample C Male 16.9
Sample D Male 12.9
Periaqueductal gray
nTPM: 24.9
Samples: 3

Max nTPM: 27.5
Min nTPM: 22.1
Sample B Female 22.1
Sample C Male 25.2
Sample D Male 27.5
Superior colliculi
nTPM: 74.5
Samples: 4

Max nTPM: 183.2
Min nTPM: 15.6
Sample A Female 78.4
Sample B Female 183.2
Sample C Male 15.6
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.7
Sample A Male 1.0
Sample B Male 0.7
Sample C Female 1.3
Sample D Female 1.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68668108 Antisense, RP_050203_01_D10, Mouse strain C57BL/6J (56 days, male) 0.6
77790730 Antisense, RP_070208_04_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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