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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RGCC
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:113.4 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:16.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035638
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 113.4
Samples: 300

Max nTPM: 390.4
Min nTPM: 32.5
Std nTPM: 50.9
Median nTPM: 105.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 390.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 367.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 287.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 268.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 262.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 259.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 254.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 227.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 223.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 221.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 218.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 217.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 209.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 202.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 202.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 202.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 201.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 199.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 199.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 198.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 194.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 194.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 190.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 189.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 188.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 188.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 186.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 185.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 184.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 183.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 181.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 178.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 178.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 176.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 175.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 175.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 174.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 171.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 169.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 165.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 162.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 161.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 160.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 159.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 158.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 156.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 155.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 154.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 151.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 148.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 148.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 148.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 147.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 147.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 146.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 146.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 145.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 145.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 144.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 144.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 144.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 144.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 143.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 142.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 142.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 142.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 140.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 140.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 139.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 139.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 138.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 138.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 137.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 136.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 136.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 135.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 135.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 134.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 134.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 134.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 133.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 133.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 133.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 133.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 132.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 131.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 130.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 130.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 130.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 130.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 129.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 128.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 128.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 128.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 128.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 127.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 127.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 127.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 127.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 126.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 126.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 126.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 126.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 125.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 125.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 125.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 124.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 124.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 124.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 122.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 122.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 122.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 121.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 121.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 120.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 120.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 120.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 120.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 119.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 119.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 119.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 118.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 118.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 116.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 116.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 115.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 115.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 115.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 114.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 114.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 113.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 112.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 112.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 112.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 111.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 109.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 109.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 109.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 109.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 109.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 108.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 108.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 108.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 107.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 107.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 107.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 107.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 106.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 106.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 105.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 104.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 104.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 104.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 104.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 103.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 101.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 100.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 100.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 100.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 99.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 99.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 99.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 98.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 97.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 97.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 97.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 96.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 96.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 96.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 96.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 95.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 94.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 94.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 94.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 94.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 93.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 93.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 93.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 93.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 92.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 91.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 91.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 91.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 91.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 90.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 90.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 90.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 89.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 89.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 89.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 88.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 88.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 87.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 87.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 87.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 86.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 86.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 85.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 85.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 84.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 83.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 83.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 83.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 83.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 82.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 82.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 82.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 81.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 81.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 81.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 80.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 80.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 79.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 79.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 79.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 78.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 78.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 78.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 77.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 77.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 77.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 76.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 76.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 76.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 76.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 76.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 75.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 74.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 74.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 74.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 74.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 73.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 72.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 72.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 71.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 71.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 71.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 71.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 70.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 70.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 70.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 69.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 69.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 69.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 69.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 69.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 68.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 68.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 67.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 67.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 66.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 66.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 66.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 65.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 65.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 65.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 65.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 65.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 64.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 64.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 64.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 63.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 63.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 63.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 63.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 63.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 62.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 61.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 61.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 61.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 60.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 59.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 58.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 58.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 58.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 57.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 57.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 56.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 56.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 55.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 55.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 55.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 54.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 54.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 54.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 54.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 54.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 53.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 52.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 51.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 50.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 50.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 50.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 49.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 48.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 48.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 43.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 42.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 42.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 32.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.0
FF:10164-103B2 76 years, female 65.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.6
Pig sample Sample description nTPM
Caudate
nTPM: 16.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.7
Sample A Female 17.0
Sample B Female 15.7
Sample C Male 17.9
Sample D Male 15.9

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