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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:132.3 nTPM
HPA Brain:1211.4 nTPM
GTEx:132.3 nTPM
FANTOM5:88.7 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:28.3 nTPM
Allen mouse:14.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1211.4
Sample id Sample description nTPM
Amygdala
nTPM: 999.8
2695 Female, age 67, right hemisphere 1181.2
2514 Male, age 75, right hemisphere 1153.1
2517 Female, age 94, left hemisphere 1112.4
2814 Male, age 76, right hemisphere 917.9
1987 Female, age 91, left hemisphere 634.2
Basal amygdala
nTPM: 973.1
2827 Female, age 67, right hemisphere 1117.1
2609 Male, age 75, right hemisphere 1089.3
2243 Female, age 91, right hemisphere 1014.7
2110 Male, age 80, left hemisphere 927.9
2685 Female, age 94, left hemisphere 890.6
1955 Male, age 76, both hemispheres 798.8
Central amygdala
nTPM: 1211.4
2826 Female, age 94, left hemisphere 1531.6
2515 Male, age 75, right hemisphere 1348.7
2239 Male, age 80, left hemisphere 1347.6
1905 Male, age 76, both hemispheres 933.6
2701 Female, age 91, right hemisphere 895.7
Corticomedial amygdala
nTPM: 1050.3
2535 Female, age 67, right hemisphere 1645.3
2240 Male, age 76, both hemispheres 1010.6
2829 Male, age 80, left hemisphere 986.9
2242 Female, age 91, right hemisphere 969.3
2428 Male, age 75, right hemisphere 871.5
2429 Female, age 94, left hemisphere 817.9
Lateral amygdala
nTPM: 1193.8
2256 Male, age 80, left hemisphere 1467.9
2534 Female, age 94, left hemisphere 1428.9
2516 Male, age 75, right hemisphere 1186.1
2255 Female, age 91, right hemisphere 1149.4
2830 Female, age 67, right hemisphere 1117.7
1883 Male, age 76, both hemispheres 812.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.3
Samples: 181

Max nTPM: 416.2
Min nTPM: 32.8
Std nTPM: 66.2
Median nTPM: 119.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 416.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 393.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 342.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 320.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 290.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 279.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 271.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 270.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 260.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 256.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 250.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 249.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 246.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 244.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 242.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 234.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 230.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 218.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 206.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 199.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 198.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 195.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 195.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 194.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 193.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 192.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 191.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 191.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 186.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 186.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 183.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 183.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 183.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 182.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 178.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 177.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 177.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 175.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 174.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 174.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 170.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 169.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 169.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 166.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 165.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 165.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 164.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 160.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 160.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 160.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 159.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 159.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 157.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 155.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 153.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 151.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 151.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 150.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 148.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 147.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 147.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 146.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 145.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 144.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 143.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 143.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 143.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 142.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 142.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 141.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 141.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 140.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 135.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 135.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 134.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 131.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 130.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 130.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 126.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 126.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 123.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 123.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 122.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 122.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 121.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 121.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 120.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 119.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 119.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 117.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 116.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 111.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 109.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 109.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 109.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 107.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 106.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 106.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 106.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 105.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 103.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 102.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 102.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 102.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 100.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 99.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 99.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 99.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 98.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 98.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 98.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 98.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 98.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 97.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 97.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 96.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 96.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 95.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 95.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 94.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 90.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 90.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 89.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 89.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 89.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 88.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 87.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 87.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 85.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 84.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 84.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 84.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 83.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 82.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 82.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 80.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 79.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 78.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 77.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 77.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 77.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 76.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 76.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 76.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 75.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 72.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 70.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 70.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 69.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 69.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 69.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 67.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 66.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 65.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 63.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 62.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 59.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 58.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 57.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 55.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 54.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 53.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 53.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 51.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 48.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 44.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 37.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 35.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 35.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 34.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 32.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 88.7
FF:10151-102I7 76 years, female 88.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.6
Pig sample Sample description nTPM
Amygdala
nTPM: 45.6
Samples: 4

Max nTPM: 60.1
Min nTPM: 33.6
Sample A Female 43.4
Sample B Female 60.1
Sample C Male 45.3
Sample D Male 33.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.3
Samples: 4

Max nTPM: 44.0
Min nTPM: 20.5
Sample A Male 25.3
Sample B Male 20.5
Sample C Female 44.0
Sample D Female 23.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.8
1881 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 14.8
1880 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 7.5

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