MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.2 nTPM
HPA Brain:154.7 nTPM
GTEx:51.2 nTPM
FANTOM5:326.5 Scaled Tags Per Million
Pig:91.7 nTPM
Mouse:71.8 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 154.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.0
1830 Male, age 51, unknown 172.5
1833 Male, age 53, unknown 152.5
2411 Female, age 72, unknown 142.7
1870 Female, age 42, unknown 134.3
2019 Male, age 18, unknown 125.8
2828 Female, age 72, unknown 114.7
2219 Male, age 76, both hemispheres 97.9
2666 Male, age 74, left hemisphere 87.8
2586 Male, age 75, left hemisphere 82.3
1827 Male, age 72, unknown 79.4
Dorsal raphe nucleus
nTPM: 84.4
2750 Male, age 76, both hemispheres 169.3
2016 Female, age 72, unknown 85.8
1828 Male, age 53, unknown 77.5
2047 Male, age 72, unknown 48.9
2298 Female, age 72, unknown 40.5
Inferior colliculus
nTPM: 70.3
2849 Male, age 72, unknown 82.5
1890 Male, age 53, unknown 76.4
1848 Female, age 42, unknown 74.8
2097 Female, age 72, unknown 47.3
Median raphe nucleus
nTPM: 93.9
2220 Male, age 76, midline 93.9
Periaquaductal grey, anterior
nTPM: 51.6
1947 Male, age 18, unknown 63.6
1795 Male, age 51, unknown 50.5
2502 Female, age 75, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 50.0
2464 Female, age 72, unknown 81.9
1831 Male, age 72, unknown 59.0
2850 Male, age 76, both hemispheres 34.1
1840 Male, age 53, unknown 25.1
Periaquaductal grey, lateral
nTPM: 63.1
2272 Male, age 74, both hemispheres 85.1
2053 Male, age 18, unknown 69.1
2140 Male, age 76, both hemispheres 35.1
Pretectal area
nTPM: 71.6
2407 Male, age 75, both hemispheres 104.6
2316 Male, age 76, right hemisphere 103.9
1815 Male, age 53, unknown 100.9
2825 Male, age 18, unknown 74.8
1817 Female, age 42, unknown 73.9
2007 Male, age 72, unknown 70.4
2273 Male, age 74, both hemispheres 63.0
2667 Female, age 75, unknown 58.1
2224 Female, age 72, unknown 57.1
1944 Female, age 72, unknown 44.3
1816 Male, age 51, unknown 36.4
Red nucleus
nTPM: 154.7
2823 Male, age 76, right hemisphere 205.6
1865 Male, age 51, unknown 193.1
1904 Male, age 53, unknown 167.3
2769 Male, age 72, unknown 166.8
2227 Male, age 72, unknown 164.5
2785 Male, age 18, unknown 163.2
1821 Female, age 72, unknown 158.7
2503 Female, age 72, unknown 139.5
2588 Male, age 74, left hemisphere 137.0
2725 Female, age 75, unknown 133.1
2584 Male, age 75, left hemisphere 114.3
1954 Female, age 42, unknown 113.8
Substantia nigra
nTPM: 78.4
2590 Female, age 75, unknown 110.7
2583 Male, age 75, right hemisphere 107.8
1889 Female, age 72, unknown 86.2
1851 Male, age 51, unknown 80.7
1941 Male, age 53, unknown 79.4
2699 Male, age 18, unknown 77.1
2409 Female, age 72, unknown 73.5
2241 Male, age 72, unknown 60.9
2665 Male, age 74, both hemispheres 54.3
1916 Female, age 42, unknown 53.6
Superior colliculus
nTPM: 96.2
1913 Female, age 42, unknown 153.5
1895 Male, age 76, right hemisphere 136.7
1995 Male, age 72, unknown 128.9
2587 Male, age 74, left hemisphere 106.4
2668 Female, age 75, unknown 103.0
1839 Male, age 51, unknown 98.6
1796 Male, age 53, unknown 73.0
2087 Female, age 72, unknown 58.0
2664 Male, age 75, both hemispheres 57.2
2261 Male, age 18, unknown 47.1
Ventral tegmental area
nTPM: 101.8
2223 Female, age 72, unknown 175.6
2410 Female, age 72, unknown 113.5
2218 Male, age 76, both hemispheres 95.0
1942 Male, age 51, unknown 81.4
2021 Male, age 53, unknown 80.8
1915 Female, age 42, unknown 64.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.2
Samples: 183

Max nTPM: 224.0
Min nTPM: 2.3
Std nTPM: 35.4
Median nTPM: 42.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 224.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 201.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 168.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 156.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 151.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 150.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 144.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 127.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 123.0
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 120.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 116.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 326.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 326.5
FF:10158-103A5 76 years, female 326.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 91.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.7
Samples: 4

Max nTPM: 154.0
Min nTPM: 44.0
Sample A Female 62.5
Sample B Female 44.0
Sample C Male 70.4
Sample D Male 154.0
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 220.5
Min nTPM: 41.5
Sample A Female 220.5
Sample B Female 61.6
Sample C Male 41.5
Sample D Male 43.3
Periaqueductal gray
nTPM: 47.5
Samples: 3

Max nTPM: 54.8
Min nTPM: 36.0
Sample B Female 51.8
Sample C Male 36.0
Sample D Male 54.8
Superior colliculi
nTPM: 58.2
Samples: 4

Max nTPM: 87.5
Min nTPM: 25.3
Sample A Female 53.4
Sample B Female 25.3
Sample C Male 66.5
Sample D Male 87.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 80.4
Min nTPM: 63.4
Sample A Male 63.4
Sample B Male 66.0
Sample C Female 77.4
Sample D Female 80.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69672258 Antisense, RP_050428_03_D04, Mouse strain C57BL/6J (56 days, male) 3.5
74882584 Antisense, RP_060315_04_F03, Mouse strain C57BL/6J (56 days, male) 3.1

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