MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:203.1 nTPM
HPA Brain:156.4 nTPM
GTEx:203.1 nTPM
FANTOM5:114.4 Scaled Tags Per Million
Pig:51.5 nTPM
Mouse:181.8 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 156.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.7
2219 Male, age 76, both hemispheres 134.2
1827 Male, age 72, unknown 131.6
2828 Female, age 72, unknown 127.8
2666 Male, age 74, left hemisphere 122.7
2019 Male, age 18, unknown 109.6
2411 Female, age 72, unknown 104.5
1833 Male, age 53, unknown 100.7
2586 Male, age 75, left hemisphere 99.9
1870 Female, age 42, unknown 97.2
1830 Male, age 51, unknown 89.2
Dorsal raphe nucleus
nTPM: 108.0
2298 Female, age 72, unknown 130.5
2750 Male, age 76, both hemispheres 120.3
2047 Male, age 72, unknown 120.0
1828 Male, age 53, unknown 95.2
2016 Female, age 72, unknown 73.9
Inferior colliculus
nTPM: 98.7
2097 Female, age 72, unknown 107.0
2849 Male, age 72, unknown 100.7
1890 Male, age 53, unknown 97.3
1848 Female, age 42, unknown 89.7
Median raphe nucleus
nTPM: 156.4
2220 Male, age 76, midline 156.4
Periaquaductal grey, anterior
nTPM: 107.2
1795 Male, age 51, unknown 127.2
1947 Male, age 18, unknown 113.3
2502 Female, age 75, unknown 81.2
Periaquaductal grey, dorsal
nTPM: 92.1
1831 Male, age 72, unknown 104.3
2850 Male, age 76, both hemispheres 93.6
1840 Male, age 53, unknown 87.8
2464 Female, age 72, unknown 82.8
Periaquaductal grey, lateral
nTPM: 83.9
2272 Male, age 74, both hemispheres 97.3
2053 Male, age 18, unknown 87.9
2140 Male, age 76, both hemispheres 66.6
Pretectal area
nTPM: 123.5
1816 Male, age 51, unknown 172.2
2007 Male, age 72, unknown 164.0
1817 Female, age 42, unknown 162.1
1944 Female, age 72, unknown 155.8
1815 Male, age 53, unknown 146.1
2667 Female, age 75, unknown 121.3
2224 Female, age 72, unknown 101.3
2407 Male, age 75, both hemispheres 95.8
2825 Male, age 18, unknown 94.8
2273 Male, age 74, both hemispheres 84.1
2316 Male, age 76, right hemisphere 61.3
Red nucleus
nTPM: 92.0
2584 Male, age 75, left hemisphere 122.9
2785 Male, age 18, unknown 108.9
2725 Female, age 75, unknown 104.8
2823 Male, age 76, right hemisphere 96.9
1821 Female, age 72, unknown 95.4
2588 Male, age 74, left hemisphere 91.2
2503 Female, age 72, unknown 85.0
1954 Female, age 42, unknown 83.6
1865 Male, age 51, unknown 82.2
2769 Male, age 72, unknown 78.8
1904 Male, age 53, unknown 77.6
2227 Male, age 72, unknown 76.2
Substantia nigra
nTPM: 138.1
1916 Female, age 42, unknown 201.1
2665 Male, age 74, both hemispheres 174.6
1941 Male, age 53, unknown 166.2
1851 Male, age 51, unknown 152.1
1889 Female, age 72, unknown 142.6
2699 Male, age 18, unknown 123.8
2241 Male, age 72, unknown 118.5
2409 Female, age 72, unknown 111.4
2583 Male, age 75, right hemisphere 99.0
2590 Female, age 75, unknown 92.1
Superior colliculus
nTPM: 110.1
2668 Female, age 75, unknown 170.9
1796 Male, age 53, unknown 130.9
2087 Female, age 72, unknown 128.3
2587 Male, age 74, left hemisphere 112.9
2261 Male, age 18, unknown 107.2
2664 Male, age 75, both hemispheres 98.1
1895 Male, age 76, right hemisphere 95.0
1839 Male, age 51, unknown 91.9
1913 Female, age 42, unknown 89.1
1995 Male, age 72, unknown 76.8
Ventral tegmental area
nTPM: 121.4
2218 Male, age 76, both hemispheres 151.8
1915 Female, age 42, unknown 145.4
2410 Female, age 72, unknown 142.9
2223 Female, age 72, unknown 97.0
2021 Male, age 53, unknown 95.9
1942 Male, age 51, unknown 95.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 203.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 203.1
Samples: 183

Max nTPM: 412.1
Min nTPM: 74.5
Std nTPM: 74.6
Median nTPM: 187.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 412.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 410.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 404.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 374.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 352.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 345.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 345.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 345.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 343.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 336.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 327.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 114.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.4
FF:10158-103A5 76 years, female 114.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.4
Samples: 4

Max nTPM: 73.0
Min nTPM: 27.1
Sample A Female 73.0
Sample B Female 37.3
Sample C Male 68.3
Sample D Male 27.1
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 73.3
Min nTPM: 43.1
Sample A Female 43.1
Sample B Female 45.0
Sample C Male 73.3
Sample D Male 44.5
Periaqueductal gray
nTPM: 36.9
Samples: 3

Max nTPM: 48.9
Min nTPM: 30.3
Sample B Female 31.4
Sample C Male 48.9
Sample D Male 30.3
Superior colliculi
nTPM: 49.4
Samples: 4

Max nTPM: 67.1
Min nTPM: 25.0
Sample A Female 60.4
Sample B Female 25.0
Sample C Male 67.1
Sample D Male 45.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 181.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 181.8
Samples: 4

Max nTPM: 203.3
Min nTPM: 172.3
Sample A Male 203.3
Sample B Male 176.7
Sample C Female 172.3
Sample D Female 174.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71529917 Antisense, RP_050915_01_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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